Hb_000258_240

Information

Type -
Description -
Location Contig258: 199460-202008
Sequence    

Annotation

kegg
ID rcu:RCOM_0836090
description sur2 hydroxylase/desaturase, putative (EC:1.14.13.72)
nr
ID XP_002522423.1
description sur2 hydroxylase/desaturase, putative [Ricinus communis]
swissprot
ID Q9AST3
description Sphinganine C(4)-monooxygenase 2 OS=Arabidopsis thaliana GN=SBH2 PE=1 SV=1
trembl
ID B9S8V4
description Sur2 hydroxylase/desaturase, putative OS=Ricinus communis GN=RCOM_0836090 PE=4 SV=1
Gene Ontology
ID GO:0016021
description sphinganine c -monooxygenase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_240 0.0 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
2 Hb_002781_030 0.0603115989 - - protein binding protein, putative [Ricinus communis]
3 Hb_003529_030 0.0722838705 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
4 Hb_003988_050 0.0782848373 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
5 Hb_062537_010 0.0810967329 - - hypothetical protein JCGZ_13884 [Jatropha curcas]
6 Hb_000928_190 0.0833530637 - - PREDICTED: putative acyl-activating enzyme 19 isoform X1 [Jatropha curcas]
7 Hb_000025_190 0.0837588815 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
8 Hb_000477_100 0.0891916548 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
9 Hb_000359_090 0.0899279999 - - PREDICTED: persulfide dioxygenase ETHE1 homolog, mitochondrial-like [Malus domestica]
10 Hb_000917_130 0.0934232578 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
11 Hb_000402_130 0.0946134766 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
12 Hb_000060_050 0.0970932383 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
13 Hb_000136_100 0.0978491318 - - PREDICTED: syntaxin-61 [Jatropha curcas]
14 Hb_001014_210 0.0993518507 - - CYP51 [Hevea brasiliensis]
15 Hb_002133_020 0.0994492752 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000836_280 0.1000328376 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
17 Hb_005701_120 0.1012057496 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
18 Hb_000384_070 0.1020856572 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000046_170 0.1032356466 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
20 Hb_004055_120 0.1032566179 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]

Gene co-expression network

sample Hb_000258_240 Hb_000258_240 Hb_002781_030 Hb_002781_030 Hb_000258_240--Hb_002781_030 Hb_003529_030 Hb_003529_030 Hb_000258_240--Hb_003529_030 Hb_003988_050 Hb_003988_050 Hb_000258_240--Hb_003988_050 Hb_062537_010 Hb_062537_010 Hb_000258_240--Hb_062537_010 Hb_000928_190 Hb_000928_190 Hb_000258_240--Hb_000928_190 Hb_000025_190 Hb_000025_190 Hb_000258_240--Hb_000025_190 Hb_002781_030--Hb_000928_190 Hb_000359_090 Hb_000359_090 Hb_002781_030--Hb_000359_090 Hb_148130_020 Hb_148130_020 Hb_002781_030--Hb_148130_020 Hb_013057_020 Hb_013057_020 Hb_002781_030--Hb_013057_020 Hb_001481_150 Hb_001481_150 Hb_002781_030--Hb_001481_150 Hb_000917_130 Hb_000917_130 Hb_003529_030--Hb_000917_130 Hb_000477_100 Hb_000477_100 Hb_003529_030--Hb_000477_100 Hb_000060_050 Hb_000060_050 Hb_003529_030--Hb_000060_050 Hb_004129_140 Hb_004129_140 Hb_003529_030--Hb_004129_140 Hb_005504_050 Hb_005504_050 Hb_003529_030--Hb_005504_050 Hb_000115_150 Hb_000115_150 Hb_003988_050--Hb_000115_150 Hb_000165_080 Hb_000165_080 Hb_003988_050--Hb_000165_080 Hb_002902_130 Hb_002902_130 Hb_003988_050--Hb_002902_130 Hb_001633_080 Hb_001633_080 Hb_003988_050--Hb_001633_080 Hb_003988_050--Hb_000025_190 Hb_062537_010--Hb_000025_190 Hb_001348_020 Hb_001348_020 Hb_062537_010--Hb_001348_020 Hb_062537_010--Hb_000115_150 Hb_023001_040 Hb_023001_040 Hb_062537_010--Hb_023001_040 Hb_062537_010--Hb_003988_050 Hb_033152_070 Hb_033152_070 Hb_000928_190--Hb_033152_070 Hb_010042_020 Hb_010042_020 Hb_000928_190--Hb_010042_020 Hb_000928_190--Hb_001481_150 Hb_000928_190--Hb_003988_050 Hb_002660_170 Hb_002660_170 Hb_000025_190--Hb_002660_170 Hb_004880_150 Hb_004880_150 Hb_000025_190--Hb_004880_150 Hb_005648_010 Hb_005648_010 Hb_000025_190--Hb_005648_010 Hb_000025_190--Hb_000115_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.641 11.081 10.619 43.794 9.22291 15.4583
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3913 17.5423 14.7995 21.8053 15.8448

CAGE analysis