Hb_001481_150

Information

Type -
Description -
Location Contig1481: 194372-199975
Sequence    

Annotation

kegg
ID pop:POPTR_0001s15440g
description hypothetical protein
nr
ID XP_006368986.1
description hypothetical protein POPTR_0001s15440g [Populus trichocarpa]
swissprot
ID Q20390
description Palmitoyl-protein thioesterase 1 OS=Caenorhabditis elegans GN=ppt-1 PE=2 SV=2
trembl
ID A9PBW9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s15440g PE=2 SV=1
Gene Ontology
ID GO:0008474
description palmitoyl-protein thioesterase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12122: 194604-198265
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001481_150 0.0 - - hypothetical protein POPTR_0001s15440g [Populus trichocarpa]
2 Hb_004480_020 0.0863456751 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
3 Hb_000928_190 0.0874099902 - - PREDICTED: putative acyl-activating enzyme 19 isoform X1 [Jatropha curcas]
4 Hb_033152_070 0.087867864 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
5 Hb_004525_040 0.08897559 - - PREDICTED: sugar transporter ERD6-like 6 [Jatropha curcas]
6 Hb_019280_020 0.0894064276 - - PREDICTED: proline-rich receptor-like protein kinase PERK14 isoform X1 [Jatropha curcas]
7 Hb_001006_270 0.0967523503 - - peptide transporter, putative [Ricinus communis]
8 Hb_010042_020 0.1009542175 - - UDP-n-acteylglucosamine pyrophosphorylase, putative [Ricinus communis]
9 Hb_009252_030 0.102308167 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
10 Hb_002781_030 0.1031191379 - - protein binding protein, putative [Ricinus communis]
11 Hb_012651_010 0.1056972047 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
12 Hb_000023_300 0.1071655172 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
13 Hb_001097_040 0.1081202782 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
14 Hb_001021_010 0.108335048 - - PREDICTED: bifunctional protein FolD 2 [Jatropha curcas]
15 Hb_000256_230 0.108369793 - - PREDICTED: uncharacterized protein LOC105637594 [Jatropha curcas]
16 Hb_007137_050 0.1083917225 - - Uncharacterized protein isoform 1 [Theobroma cacao]
17 Hb_003052_180 0.1100127141 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
18 Hb_000984_310 0.1101169168 - - Hydrolase, hydrolyzing O-glycosyl compounds, putative [Theobroma cacao]
19 Hb_007286_020 0.1103548963 - - hypothetical protein L484_010675 [Morus notabilis]
20 Hb_003988_050 0.1116490081 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001481_150 Hb_001481_150 Hb_004480_020 Hb_004480_020 Hb_001481_150--Hb_004480_020 Hb_000928_190 Hb_000928_190 Hb_001481_150--Hb_000928_190 Hb_033152_070 Hb_033152_070 Hb_001481_150--Hb_033152_070 Hb_004525_040 Hb_004525_040 Hb_001481_150--Hb_004525_040 Hb_019280_020 Hb_019280_020 Hb_001481_150--Hb_019280_020 Hb_001006_270 Hb_001006_270 Hb_001481_150--Hb_001006_270 Hb_007286_020 Hb_007286_020 Hb_004480_020--Hb_007286_020 Hb_007137_050 Hb_007137_050 Hb_004480_020--Hb_007137_050 Hb_000023_300 Hb_000023_300 Hb_004480_020--Hb_000023_300 Hb_000085_450 Hb_000085_450 Hb_004480_020--Hb_000085_450 Hb_001097_040 Hb_001097_040 Hb_004480_020--Hb_001097_040 Hb_000928_190--Hb_033152_070 Hb_000258_240 Hb_000258_240 Hb_000928_190--Hb_000258_240 Hb_002781_030 Hb_002781_030 Hb_000928_190--Hb_002781_030 Hb_010042_020 Hb_010042_020 Hb_000928_190--Hb_010042_020 Hb_003988_050 Hb_003988_050 Hb_000928_190--Hb_003988_050 Hb_033152_070--Hb_010042_020 Hb_003207_020 Hb_003207_020 Hb_033152_070--Hb_003207_020 Hb_033152_070--Hb_004525_040 Hb_003052_180 Hb_003052_180 Hb_033152_070--Hb_003052_180 Hb_000402_130 Hb_000402_130 Hb_033152_070--Hb_000402_130 Hb_000389_030 Hb_000389_030 Hb_004525_040--Hb_000389_030 Hb_001021_010 Hb_001021_010 Hb_004525_040--Hb_001021_010 Hb_000256_230 Hb_000256_230 Hb_004525_040--Hb_000256_230 Hb_004126_040 Hb_004126_040 Hb_004525_040--Hb_004126_040 Hb_004525_040--Hb_010042_020 Hb_012362_030 Hb_012362_030 Hb_019280_020--Hb_012362_030 Hb_000152_710 Hb_000152_710 Hb_019280_020--Hb_000152_710 Hb_029510_100 Hb_029510_100 Hb_019280_020--Hb_029510_100 Hb_019280_020--Hb_033152_070 Hb_019280_020--Hb_004525_040 Hb_001006_270--Hb_000928_190 Hb_000035_330 Hb_000035_330 Hb_001006_270--Hb_000035_330 Hb_000237_050 Hb_000237_050 Hb_001006_270--Hb_000237_050 Hb_004094_020 Hb_004094_020 Hb_001006_270--Hb_004094_020 Hb_000701_030 Hb_000701_030 Hb_001006_270--Hb_000701_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.61971 18.2654 12.3116 58.477 10.6318 10.6303
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2517 10.0705 10.8544 23.1656 19.8241

CAGE analysis