Hb_001006_270

Information

Type -
Description -
Location Contig1006: 314121-318774
Sequence    

Annotation

kegg
ID rcu:RCOM_0776160
description peptide transporter, putative
nr
ID XP_002521890.1
description peptide transporter, putative [Ricinus communis]
swissprot
ID P46032
description Protein NRT1/ PTR FAMILY 8.3 OS=Arabidopsis thaliana GN=NPF8.3 PE=1 SV=1
trembl
ID B9S7C1
description Peptide transporter, putative OS=Ricinus communis GN=RCOM_0776160 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00419: 314164-318631 , PASA_asmbl_00420: 314170-318603
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001006_270 0.0 - - peptide transporter, putative [Ricinus communis]
2 Hb_000928_190 0.0915506725 - - PREDICTED: putative acyl-activating enzyme 19 isoform X1 [Jatropha curcas]
3 Hb_001481_150 0.0967523503 - - hypothetical protein POPTR_0001s15440g [Populus trichocarpa]
4 Hb_000035_330 0.1005731887 - - Transmembrane protein 85 [Theobroma cacao]
5 Hb_000237_050 0.1018532307 - - CP2 [Hevea brasiliensis]
6 Hb_004094_020 0.1071573233 - - Pyruvate kinase family protein isoform 1 [Theobroma cacao]
7 Hb_000701_030 0.1075503643 - - Sodium/hydrogen exchanger 6 -like protein [Gossypium arboreum]
8 Hb_000003_310 0.1075691667 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
9 Hb_003055_040 0.112458637 - - PREDICTED: secretory carrier-associated membrane protein 3-like isoform X1 [Jatropha curcas]
10 Hb_000152_700 0.1135601695 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
11 Hb_007137_050 0.1147428317 - - Uncharacterized protein isoform 1 [Theobroma cacao]
12 Hb_001021_010 0.115772502 - - PREDICTED: bifunctional protein FolD 2 [Jatropha curcas]
13 Hb_003052_030 0.11758177 - - 6-phosphogluconate dehydrogenase family protein isoform 1 [Theobroma cacao]
14 Hb_021297_020 0.1183957018 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
15 Hb_166053_010 0.1195432976 - - glyceraldehyde-3-phosphate dehydrogenase, partial [Vernicia fordii]
16 Hb_002902_130 0.1196390215 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
17 Hb_005914_140 0.1210527258 - - PREDICTED: uncharacterized protein LOC105632183 [Jatropha curcas]
18 Hb_002686_310 0.1215055539 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
19 Hb_000674_010 0.1216142753 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
20 Hb_010042_020 0.1221640889 - - UDP-n-acteylglucosamine pyrophosphorylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001006_270 Hb_001006_270 Hb_000928_190 Hb_000928_190 Hb_001006_270--Hb_000928_190 Hb_001481_150 Hb_001481_150 Hb_001006_270--Hb_001481_150 Hb_000035_330 Hb_000035_330 Hb_001006_270--Hb_000035_330 Hb_000237_050 Hb_000237_050 Hb_001006_270--Hb_000237_050 Hb_004094_020 Hb_004094_020 Hb_001006_270--Hb_004094_020 Hb_000701_030 Hb_000701_030 Hb_001006_270--Hb_000701_030 Hb_033152_070 Hb_033152_070 Hb_000928_190--Hb_033152_070 Hb_000258_240 Hb_000258_240 Hb_000928_190--Hb_000258_240 Hb_002781_030 Hb_002781_030 Hb_000928_190--Hb_002781_030 Hb_010042_020 Hb_010042_020 Hb_000928_190--Hb_010042_020 Hb_000928_190--Hb_001481_150 Hb_003988_050 Hb_003988_050 Hb_000928_190--Hb_003988_050 Hb_004480_020 Hb_004480_020 Hb_001481_150--Hb_004480_020 Hb_001481_150--Hb_033152_070 Hb_004525_040 Hb_004525_040 Hb_001481_150--Hb_004525_040 Hb_019280_020 Hb_019280_020 Hb_001481_150--Hb_019280_020 Hb_000035_330--Hb_000701_030 Hb_003097_140 Hb_003097_140 Hb_000035_330--Hb_003097_140 Hb_002902_130 Hb_002902_130 Hb_000035_330--Hb_002902_130 Hb_143629_130 Hb_143629_130 Hb_000035_330--Hb_143629_130 Hb_007286_020 Hb_007286_020 Hb_000035_330--Hb_007286_020 Hb_103684_010 Hb_103684_010 Hb_000237_050--Hb_103684_010 Hb_004450_070 Hb_004450_070 Hb_000237_050--Hb_004450_070 Hb_019280_010 Hb_019280_010 Hb_000237_050--Hb_019280_010 Hb_000237_050--Hb_003097_140 Hb_027445_020 Hb_027445_020 Hb_000237_050--Hb_027445_020 Hb_001437_190 Hb_001437_190 Hb_000237_050--Hb_001437_190 Hb_183867_010 Hb_183867_010 Hb_004094_020--Hb_183867_010 Hb_135757_020 Hb_135757_020 Hb_004094_020--Hb_135757_020 Hb_005914_140 Hb_005914_140 Hb_004094_020--Hb_005914_140 Hb_000494_030 Hb_000494_030 Hb_004094_020--Hb_000494_030 Hb_003994_220 Hb_003994_220 Hb_004094_020--Hb_003994_220 Hb_000265_140 Hb_000265_140 Hb_000701_030--Hb_000265_140 Hb_021576_070 Hb_021576_070 Hb_000701_030--Hb_021576_070 Hb_000701_030--Hb_000494_030 Hb_000254_070 Hb_000254_070 Hb_000701_030--Hb_000254_070 Hb_000003_310 Hb_000003_310 Hb_000701_030--Hb_000003_310 Hb_001097_040 Hb_001097_040 Hb_000701_030--Hb_001097_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.33196 17.7613 8.73677 53.6591 12.0117 15.2297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.139 9.81745 8.34885 35.1643 23.9752

CAGE analysis