Hb_103684_010

Information

Type -
Description -
Location Contig103684: 72-2190
Sequence    

Annotation

kegg
ID pxb:103958580
description cullin-1-like
nr
ID XP_009594442.1
description PREDICTED: cullin-1 isoform X3 [Nicotiana tomentosiformis]
swissprot
ID Q94AH6
description Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1
trembl
ID A0A067KUU7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01994 PE=3 SV=1
Gene Ontology
ID GO:0031461
description cullin-1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103684_010 0.0 - - PREDICTED: cullin-1 isoform X3 [Nicotiana tomentosiformis]
2 Hb_000237_050 0.0678757454 - - CP2 [Hevea brasiliensis]
3 Hb_003544_050 0.0685465182 - - PREDICTED: uncharacterized protein LOC105644300 isoform X1 [Jatropha curcas]
4 Hb_019280_010 0.0715206759 - - PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]
5 Hb_003097_140 0.0772970254 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
6 Hb_012114_100 0.0777327701 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
7 Hb_001369_360 0.080181304 - - embryo yellow protein, partial [Manihot esculenta]
8 Hb_000363_040 0.0805527505 - - Protein transport protein Sec24A, putative [Ricinus communis]
9 Hb_027445_020 0.0816189818 - - PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Jatropha curcas]
10 Hb_001500_100 0.0823083846 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004019_120 0.0828006396 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
12 Hb_001511_180 0.0847194679 - - Clathrin heavy chain 2 -like protein [Gossypium arboreum]
13 Hb_000140_210 0.0863925129 - - sec10, putative [Ricinus communis]
14 Hb_001821_150 0.0866606212 - - PREDICTED: potassium transporter 7-like [Jatropha curcas]
15 Hb_002749_060 0.0888458572 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
16 Hb_001437_190 0.0890130556 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_000976_100 0.0905183203 - - eukaryotic translation elongation factor, putative [Ricinus communis]
18 Hb_011819_020 0.0905670329 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
19 Hb_001377_350 0.0911460054 - - PREDICTED: exportin-2 [Jatropha curcas]
20 Hb_012055_040 0.0925451499 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_103684_010 Hb_103684_010 Hb_000237_050 Hb_000237_050 Hb_103684_010--Hb_000237_050 Hb_003544_050 Hb_003544_050 Hb_103684_010--Hb_003544_050 Hb_019280_010 Hb_019280_010 Hb_103684_010--Hb_019280_010 Hb_003097_140 Hb_003097_140 Hb_103684_010--Hb_003097_140 Hb_012114_100 Hb_012114_100 Hb_103684_010--Hb_012114_100 Hb_001369_360 Hb_001369_360 Hb_103684_010--Hb_001369_360 Hb_004450_070 Hb_004450_070 Hb_000237_050--Hb_004450_070 Hb_000237_050--Hb_019280_010 Hb_000237_050--Hb_003097_140 Hb_027445_020 Hb_027445_020 Hb_000237_050--Hb_027445_020 Hb_001437_190 Hb_001437_190 Hb_000237_050--Hb_001437_190 Hb_000140_210 Hb_000140_210 Hb_003544_050--Hb_000140_210 Hb_000809_230 Hb_000809_230 Hb_003544_050--Hb_000809_230 Hb_001377_350 Hb_001377_350 Hb_003544_050--Hb_001377_350 Hb_009296_040 Hb_009296_040 Hb_003544_050--Hb_009296_040 Hb_002749_060 Hb_002749_060 Hb_003544_050--Hb_002749_060 Hb_004679_030 Hb_004679_030 Hb_003544_050--Hb_004679_030 Hb_019280_010--Hb_004450_070 Hb_001500_100 Hb_001500_100 Hb_019280_010--Hb_001500_100 Hb_004677_050 Hb_004677_050 Hb_019280_010--Hb_004677_050 Hb_000085_450 Hb_000085_450 Hb_019280_010--Hb_000085_450 Hb_003994_220 Hb_003994_220 Hb_003097_140--Hb_003994_220 Hb_001440_020 Hb_001440_020 Hb_003097_140--Hb_001440_020 Hb_007765_040 Hb_007765_040 Hb_003097_140--Hb_007765_040 Hb_000477_100 Hb_000477_100 Hb_003097_140--Hb_000477_100 Hb_000390_050 Hb_000390_050 Hb_003097_140--Hb_000390_050 Hb_003097_140--Hb_027445_020 Hb_012518_070 Hb_012518_070 Hb_012114_100--Hb_012518_070 Hb_006452_120 Hb_006452_120 Hb_012114_100--Hb_006452_120 Hb_012114_100--Hb_001440_020 Hb_011249_070 Hb_011249_070 Hb_012114_100--Hb_011249_070 Hb_012055_040 Hb_012055_040 Hb_012114_100--Hb_012055_040 Hb_003498_080 Hb_003498_080 Hb_012114_100--Hb_003498_080 Hb_001369_360--Hb_027445_020 Hb_000976_100 Hb_000976_100 Hb_001369_360--Hb_000976_100 Hb_001369_360--Hb_003097_140 Hb_000237_040 Hb_000237_040 Hb_001369_360--Hb_000237_040 Hb_001821_150 Hb_001821_150 Hb_001369_360--Hb_001821_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1763 30.1021 17.3291 47.9424 16.5413 24.6268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.0833 13.9002 26.8386 39.1588 32.6205

CAGE analysis