Hb_000237_040

Information

Type -
Description -
Location Contig237: 86320-96169
Sequence    

Annotation

kegg
ID rcu:RCOM_1449140
description vacuolar proton atpase, putative (EC:3.6.3.14)
nr
ID XP_012067201.1
description PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
swissprot
ID Q8W4S4
description V-type proton ATPase subunit a3 OS=Arabidopsis thaliana GN=VHA-a3 PE=1 SV=1
trembl
ID A0A067L018
description V-type proton ATPase subunit a OS=Jatropha curcas GN=JCGZ_26760 PE=3 SV=1
Gene Ontology
ID GO:0000220
description vacuolar proton atpase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24777: 86499-96174
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000237_040 0.0 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
2 Hb_000976_100 0.0596401967 - - eukaryotic translation elongation factor, putative [Ricinus communis]
3 Hb_027445_020 0.0648822196 - - PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Jatropha curcas]
4 Hb_126976_010 0.0756676225 - - -
5 Hb_001369_360 0.079988682 - - embryo yellow protein, partial [Manihot esculenta]
6 Hb_000237_050 0.0813337597 - - CP2 [Hevea brasiliensis]
7 Hb_055062_040 0.0844809338 - - ceramidase, putative [Ricinus communis]
8 Hb_001437_190 0.0845925689 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_003097_140 0.090713288 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
10 Hb_027337_100 0.0913019232 - - Putative phagocytic receptor 1b [Gossypium arboreum]
11 Hb_002874_110 0.0919331975 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
12 Hb_003994_220 0.0933996306 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
13 Hb_021297_020 0.0936256671 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
14 Hb_003206_110 0.0947759383 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
15 Hb_009569_040 0.0969938788 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
16 Hb_103684_010 0.0979727074 - - PREDICTED: cullin-1 isoform X3 [Nicotiana tomentosiformis]
17 Hb_004317_060 0.0982463966 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
18 Hb_002025_330 0.0991150818 - - peptide transporter, putative [Ricinus communis]
19 Hb_003340_010 0.0992784646 - - PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]
20 Hb_007558_100 0.1000934817 - - PREDICTED: uncharacterized protein LOC105649092 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000237_040 Hb_000237_040 Hb_000976_100 Hb_000976_100 Hb_000237_040--Hb_000976_100 Hb_027445_020 Hb_027445_020 Hb_000237_040--Hb_027445_020 Hb_126976_010 Hb_126976_010 Hb_000237_040--Hb_126976_010 Hb_001369_360 Hb_001369_360 Hb_000237_040--Hb_001369_360 Hb_000237_050 Hb_000237_050 Hb_000237_040--Hb_000237_050 Hb_055062_040 Hb_055062_040 Hb_000237_040--Hb_055062_040 Hb_000976_100--Hb_027445_020 Hb_000976_100--Hb_001369_360 Hb_002025_330 Hb_002025_330 Hb_000976_100--Hb_002025_330 Hb_000363_040 Hb_000363_040 Hb_000976_100--Hb_000363_040 Hb_004019_120 Hb_004019_120 Hb_000976_100--Hb_004019_120 Hb_027445_020--Hb_001369_360 Hb_002874_110 Hb_002874_110 Hb_027445_020--Hb_002874_110 Hb_003097_140 Hb_003097_140 Hb_027445_020--Hb_003097_140 Hb_027445_020--Hb_000237_050 Hb_126976_010--Hb_002874_110 Hb_000890_070 Hb_000890_070 Hb_126976_010--Hb_000890_070 Hb_000809_230 Hb_000809_230 Hb_126976_010--Hb_000809_230 Hb_126976_010--Hb_000976_100 Hb_004679_030 Hb_004679_030 Hb_126976_010--Hb_004679_030 Hb_001369_360--Hb_003097_140 Hb_103684_010 Hb_103684_010 Hb_001369_360--Hb_103684_010 Hb_001821_150 Hb_001821_150 Hb_001369_360--Hb_001821_150 Hb_000237_050--Hb_103684_010 Hb_004450_070 Hb_004450_070 Hb_000237_050--Hb_004450_070 Hb_019280_010 Hb_019280_010 Hb_000237_050--Hb_019280_010 Hb_000237_050--Hb_003097_140 Hb_001437_190 Hb_001437_190 Hb_000237_050--Hb_001437_190 Hb_055062_040--Hb_002025_330 Hb_003280_020 Hb_003280_020 Hb_055062_040--Hb_003280_020 Hb_084670_010 Hb_084670_010 Hb_055062_040--Hb_084670_010 Hb_004048_120 Hb_004048_120 Hb_055062_040--Hb_004048_120 Hb_012733_070 Hb_012733_070 Hb_055062_040--Hb_012733_070 Hb_002749_060 Hb_002749_060 Hb_055062_040--Hb_002749_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.96466 13.0227 10.3628 33.3843 12.1255 18.5996
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.7326 6.41071 13.5228 26.3569 28.4119

CAGE analysis