Hb_000976_100

Information

Type -
Description -
Location Contig976: 119420-123012
Sequence    

Annotation

kegg
ID rcu:RCOM_1068970
description eukaryotic translation elongation factor, putative
nr
ID XP_002523907.1
description eukaryotic translation elongation factor, putative [Ricinus communis]
swissprot
ID O23755
description Elongation factor 2 OS=Beta vulgaris PE=2 SV=1
trembl
ID B9SD38
description Eukaryotic translation elongation factor, putative OS=Ricinus communis GN=RCOM_1068970 PE=4 SV=1
Gene Ontology
ID GO:0003746
description elongation factor 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64054: 118711-122909 , PASA_asmbl_64055: 119212-120748
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_100 0.0 - - eukaryotic translation elongation factor, putative [Ricinus communis]
2 Hb_000237_040 0.0596401967 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
3 Hb_027445_020 0.0683360419 - - PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Jatropha curcas]
4 Hb_001369_360 0.0707058973 - - embryo yellow protein, partial [Manihot esculenta]
5 Hb_002025_330 0.0757407778 - - peptide transporter, putative [Ricinus communis]
6 Hb_000363_040 0.0780869268 - - Protein transport protein Sec24A, putative [Ricinus communis]
7 Hb_004019_120 0.0809086519 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
8 Hb_002874_110 0.0823880825 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
9 Hb_000237_050 0.0834074937 - - CP2 [Hevea brasiliensis]
10 Hb_002908_050 0.0842199408 - - hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
11 Hb_000941_150 0.0848881263 - - PREDICTED: uncharacterized protein LOC105637253 isoform X1 [Jatropha curcas]
12 Hb_000069_210 0.0849433142 - - PREDICTED: exportin-2 [Jatropha curcas]
13 Hb_000409_030 0.0854500118 - - PREDICTED: uncharacterized protein LOC105642693 [Jatropha curcas]
14 Hb_004143_160 0.0858680347 - - SAB, putative [Ricinus communis]
15 Hb_003340_010 0.0859324869 - - PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]
16 Hb_003206_110 0.0862919044 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
17 Hb_003544_050 0.0863829837 - - PREDICTED: uncharacterized protein LOC105644300 isoform X1 [Jatropha curcas]
18 Hb_000809_230 0.0868045428 - - PREDICTED: uncharacterized protein LOC105639681 isoform X1 [Jatropha curcas]
19 Hb_126976_010 0.0890757887 - - -
20 Hb_000358_050 0.0901143315 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]

Gene co-expression network

sample Hb_000976_100 Hb_000976_100 Hb_000237_040 Hb_000237_040 Hb_000976_100--Hb_000237_040 Hb_027445_020 Hb_027445_020 Hb_000976_100--Hb_027445_020 Hb_001369_360 Hb_001369_360 Hb_000976_100--Hb_001369_360 Hb_002025_330 Hb_002025_330 Hb_000976_100--Hb_002025_330 Hb_000363_040 Hb_000363_040 Hb_000976_100--Hb_000363_040 Hb_004019_120 Hb_004019_120 Hb_000976_100--Hb_004019_120 Hb_000237_040--Hb_027445_020 Hb_126976_010 Hb_126976_010 Hb_000237_040--Hb_126976_010 Hb_000237_040--Hb_001369_360 Hb_000237_050 Hb_000237_050 Hb_000237_040--Hb_000237_050 Hb_055062_040 Hb_055062_040 Hb_000237_040--Hb_055062_040 Hb_027445_020--Hb_001369_360 Hb_002874_110 Hb_002874_110 Hb_027445_020--Hb_002874_110 Hb_003097_140 Hb_003097_140 Hb_027445_020--Hb_003097_140 Hb_027445_020--Hb_000237_050 Hb_001369_360--Hb_003097_140 Hb_103684_010 Hb_103684_010 Hb_001369_360--Hb_103684_010 Hb_001821_150 Hb_001821_150 Hb_001369_360--Hb_001821_150 Hb_003280_020 Hb_003280_020 Hb_002025_330--Hb_003280_020 Hb_004048_120 Hb_004048_120 Hb_002025_330--Hb_004048_120 Hb_004143_160 Hb_004143_160 Hb_002025_330--Hb_004143_160 Hb_000922_030 Hb_000922_030 Hb_002025_330--Hb_000922_030 Hb_000358_050 Hb_000358_050 Hb_002025_330--Hb_000358_050 Hb_002025_330--Hb_055062_040 Hb_016347_010 Hb_016347_010 Hb_000363_040--Hb_016347_010 Hb_002908_050 Hb_002908_050 Hb_000363_040--Hb_002908_050 Hb_005305_050 Hb_005305_050 Hb_000363_040--Hb_005305_050 Hb_004677_050 Hb_004677_050 Hb_000363_040--Hb_004677_050 Hb_000109_180 Hb_000109_180 Hb_000363_040--Hb_000109_180 Hb_009296_040 Hb_009296_040 Hb_004019_120--Hb_009296_040 Hb_000230_260 Hb_000230_260 Hb_004019_120--Hb_000230_260 Hb_000556_220 Hb_000556_220 Hb_004019_120--Hb_000556_220 Hb_001377_350 Hb_001377_350 Hb_004019_120--Hb_001377_350 Hb_001195_470 Hb_001195_470 Hb_004019_120--Hb_001195_470 Hb_000140_210 Hb_000140_210 Hb_004019_120--Hb_000140_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
96.3054 125.512 89.6307 284.736 128.412 158.07
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
95.9912 85.8885 166.45 277.093 287.964

CAGE analysis