Hb_004019_120

Information

Type -
Description -
Location Contig4019: 121328-131911
Sequence    

Annotation

kegg
ID rcu:RCOM_1076580
description hypothetical protein
nr
ID XP_012078918.1
description PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
swissprot
ID Q9Z160
description Conserved oligomeric Golgi complex subunit 1 OS=Mus musculus GN=Cog1 PE=1 SV=3
trembl
ID A0A067K8B9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13416 PE=4 SV=1
Gene Ontology
ID GO:0005794
description conserved oligomeric golgi complex subunit 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39906: 121734-132032
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004019_120 0.0 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
2 Hb_009296_040 0.0635931167 - - hypothetical protein L484_007435 [Morus notabilis]
3 Hb_000230_260 0.0686334952 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
4 Hb_000556_220 0.0720563337 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
5 Hb_001377_350 0.072663895 - - PREDICTED: exportin-2 [Jatropha curcas]
6 Hb_001195_470 0.0736567134 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]
7 Hb_000140_210 0.0753983278 - - sec10, putative [Ricinus communis]
8 Hb_000453_250 0.0769478272 - - PREDICTED: uncharacterized protein LOC105637185 [Jatropha curcas]
9 Hb_000123_180 0.0770124779 - - 2-oxoglutarate dehydrogenase, putative [Ricinus communis]
10 Hb_003544_050 0.0783183433 - - PREDICTED: uncharacterized protein LOC105644300 isoform X1 [Jatropha curcas]
11 Hb_000261_480 0.078356501 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
12 Hb_085781_020 0.0789732953 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
13 Hb_071130_010 0.0794003283 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
14 Hb_000537_050 0.0794365585 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
15 Hb_000976_100 0.0809086519 - - eukaryotic translation elongation factor, putative [Ricinus communis]
16 Hb_011819_020 0.0819319299 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
17 Hb_001440_030 0.0822693979 - - PREDICTED: exocyst complex component SEC8 [Jatropha curcas]
18 Hb_000723_220 0.0824727809 - - PREDICTED: uncharacterized protein LOC105642234 [Jatropha curcas]
19 Hb_103684_010 0.0828006396 - - PREDICTED: cullin-1 isoform X3 [Nicotiana tomentosiformis]
20 Hb_001821_150 0.0831525163 - - PREDICTED: potassium transporter 7-like [Jatropha curcas]

Gene co-expression network

sample Hb_004019_120 Hb_004019_120 Hb_009296_040 Hb_009296_040 Hb_004019_120--Hb_009296_040 Hb_000230_260 Hb_000230_260 Hb_004019_120--Hb_000230_260 Hb_000556_220 Hb_000556_220 Hb_004019_120--Hb_000556_220 Hb_001377_350 Hb_001377_350 Hb_004019_120--Hb_001377_350 Hb_001195_470 Hb_001195_470 Hb_004019_120--Hb_001195_470 Hb_000140_210 Hb_000140_210 Hb_004019_120--Hb_000140_210 Hb_009296_040--Hb_000140_210 Hb_011016_050 Hb_011016_050 Hb_009296_040--Hb_011016_050 Hb_010142_020 Hb_010142_020 Hb_009296_040--Hb_010142_020 Hb_000028_390 Hb_000028_390 Hb_009296_040--Hb_000028_390 Hb_000537_050 Hb_000537_050 Hb_009296_040--Hb_000537_050 Hb_000614_240 Hb_000614_240 Hb_009296_040--Hb_000614_240 Hb_071130_010 Hb_071130_010 Hb_000230_260--Hb_071130_010 Hb_000069_120 Hb_000069_120 Hb_000230_260--Hb_000069_120 Hb_041327_010 Hb_041327_010 Hb_000230_260--Hb_041327_010 Hb_003060_060 Hb_003060_060 Hb_000230_260--Hb_003060_060 Hb_085781_020 Hb_085781_020 Hb_000230_260--Hb_085781_020 Hb_000412_010 Hb_000412_010 Hb_000230_260--Hb_000412_010 Hb_000037_220 Hb_000037_220 Hb_000556_220--Hb_000037_220 Hb_000556_220--Hb_085781_020 Hb_002311_100 Hb_002311_100 Hb_000556_220--Hb_002311_100 Hb_140627_020 Hb_140627_020 Hb_000556_220--Hb_140627_020 Hb_000556_220--Hb_003060_060 Hb_000809_230 Hb_000809_230 Hb_001377_350--Hb_000809_230 Hb_002749_060 Hb_002749_060 Hb_001377_350--Hb_002749_060 Hb_002890_130 Hb_002890_130 Hb_001377_350--Hb_002890_130 Hb_000261_480 Hb_000261_480 Hb_001377_350--Hb_000261_480 Hb_003544_050 Hb_003544_050 Hb_001377_350--Hb_003544_050 Hb_000003_100 Hb_000003_100 Hb_001377_350--Hb_000003_100 Hb_000723_220 Hb_000723_220 Hb_001195_470--Hb_000723_220 Hb_000680_110 Hb_000680_110 Hb_001195_470--Hb_000680_110 Hb_003417_010 Hb_003417_010 Hb_001195_470--Hb_003417_010 Hb_001821_150 Hb_001821_150 Hb_001195_470--Hb_001821_150 Hb_004531_120 Hb_004531_120 Hb_001195_470--Hb_004531_120 Hb_000140_210--Hb_003544_050 Hb_000140_210--Hb_011016_050 Hb_000066_170 Hb_000066_170 Hb_000140_210--Hb_000066_170 Hb_000140_210--Hb_085781_020 Hb_000140_210--Hb_000028_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.28801 9.34996 4.17248 11.9592 7.6611 7.89052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.4374 3.65877 9.08132 11.5019 11.1826

CAGE analysis