Hb_002311_100

Information

Type transcription factor
Description TF Family: FAR1
Location Contig2311: 51025-53795
Sequence    

Annotation

kegg
ID rcu:RCOM_0999630
description hypothetical protein
nr
ID XP_012084022.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Jatropha curcas]
swissprot
ID Q9SY66
description Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis thaliana GN=FRS11 PE=2 SV=1
trembl
ID A0A067K7T5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18959 PE=4 SV=1
Gene Ontology
ID GO:0003676
description protein far1-related sequence 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24298: 50034-52544 , PASA_asmbl_24299: 50494-50690 , PASA_asmbl_24300: 52686-53927
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_100 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Jatropha curcas]
2 Hb_005656_040 0.0669826481 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
3 Hb_000556_220 0.0717289491 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
4 Hb_000723_220 0.0733462723 - - PREDICTED: uncharacterized protein LOC105642234 [Jatropha curcas]
5 Hb_000094_310 0.0757266 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]
6 Hb_009898_010 0.076468289 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
7 Hb_000696_050 0.0784770594 - - PREDICTED: CSC1-like protein At4g35870 [Jatropha curcas]
8 Hb_140627_020 0.0802906507 - - PREDICTED: uncharacterized protein LOC105637253 isoform X1 [Jatropha curcas]
9 Hb_000260_070 0.0823498666 - - kinase, putative [Ricinus communis]
10 Hb_000206_040 0.0845903808 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
11 Hb_000037_220 0.086537581 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
12 Hb_009767_080 0.088788237 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
13 Hb_002780_010 0.0903281323 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
14 Hb_008494_010 0.0909887264 - - PREDICTED: uncharacterized protein LOC105636015 [Jatropha curcas]
15 Hb_006637_020 0.0923179416 - - PREDICTED: uncharacterized protein LOC105642234 [Jatropha curcas]
16 Hb_000017_220 0.0928633221 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
17 Hb_001913_060 0.0941962626 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
18 Hb_004410_050 0.094423904 - - PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Jatropha curcas]
19 Hb_013358_010 0.0944326914 - - hypothetical protein JCGZ_07102 [Jatropha curcas]
20 Hb_000189_110 0.0946209795 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04750, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002311_100 Hb_002311_100 Hb_005656_040 Hb_005656_040 Hb_002311_100--Hb_005656_040 Hb_000556_220 Hb_000556_220 Hb_002311_100--Hb_000556_220 Hb_000723_220 Hb_000723_220 Hb_002311_100--Hb_000723_220 Hb_000094_310 Hb_000094_310 Hb_002311_100--Hb_000094_310 Hb_009898_010 Hb_009898_010 Hb_002311_100--Hb_009898_010 Hb_000696_050 Hb_000696_050 Hb_002311_100--Hb_000696_050 Hb_001188_020 Hb_001188_020 Hb_005656_040--Hb_001188_020 Hb_000412_010 Hb_000412_010 Hb_005656_040--Hb_000412_010 Hb_001628_070 Hb_001628_070 Hb_005656_040--Hb_001628_070 Hb_009767_080 Hb_009767_080 Hb_005656_040--Hb_009767_080 Hb_000206_040 Hb_000206_040 Hb_005656_040--Hb_000206_040 Hb_000037_220 Hb_000037_220 Hb_000556_220--Hb_000037_220 Hb_085781_020 Hb_085781_020 Hb_000556_220--Hb_085781_020 Hb_004019_120 Hb_004019_120 Hb_000556_220--Hb_004019_120 Hb_140627_020 Hb_140627_020 Hb_000556_220--Hb_140627_020 Hb_003060_060 Hb_003060_060 Hb_000556_220--Hb_003060_060 Hb_000230_260 Hb_000230_260 Hb_000723_220--Hb_000230_260 Hb_006637_020 Hb_006637_020 Hb_000723_220--Hb_006637_020 Hb_017358_040 Hb_017358_040 Hb_000723_220--Hb_017358_040 Hb_001195_470 Hb_001195_470 Hb_000723_220--Hb_001195_470 Hb_000723_220--Hb_085781_020 Hb_071130_010 Hb_071130_010 Hb_000723_220--Hb_071130_010 Hb_000094_310--Hb_000037_220 Hb_000094_310--Hb_000696_050 Hb_003078_020 Hb_003078_020 Hb_000094_310--Hb_003078_020 Hb_003729_030 Hb_003729_030 Hb_000094_310--Hb_003729_030 Hb_009615_170 Hb_009615_170 Hb_000094_310--Hb_009615_170 Hb_009898_010--Hb_009767_080 Hb_002780_010 Hb_002780_010 Hb_009898_010--Hb_002780_010 Hb_002316_160 Hb_002316_160 Hb_009898_010--Hb_002316_160 Hb_005486_030 Hb_005486_030 Hb_009898_010--Hb_005486_030 Hb_009898_010--Hb_005656_040 Hb_012395_140 Hb_012395_140 Hb_000696_050--Hb_012395_140 Hb_004182_050 Hb_004182_050 Hb_000696_050--Hb_004182_050 Hb_000696_050--Hb_000723_220 Hb_001550_060 Hb_001550_060 Hb_000696_050--Hb_001550_060 Hb_000213_010 Hb_000213_010 Hb_000696_050--Hb_000213_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.86118 6.78379 1.53936 4.69949 3.56888 5.09191
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.56551 1.50572 5.31155 5.07902 4.86945

CAGE analysis