Hb_017358_040

Information

Type -
Description -
Location Contig17358: 35709-43759
Sequence    

Annotation

kegg
ID rcu:RCOM_0924060
description RNA-dependent RNA polymerase, putative
nr
ID XP_012071453.1
description PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
swissprot
ID Q9SG02
description RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1 SV=1
trembl
ID A0A067L2C2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03988 PE=4 SV=1
Gene Ontology
ID GO:0003968
description rna-dependent rna polymerase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017358_040 0.0 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
2 Hb_000069_120 0.0607136993 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
3 Hb_001761_130 0.0660455673 - - PREDICTED: uncharacterized protein LOC105646118 isoform X1 [Jatropha curcas]
4 Hb_071130_010 0.0673154915 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
5 Hb_000230_260 0.0674315034 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
6 Hb_000723_220 0.06905095 - - PREDICTED: uncharacterized protein LOC105642234 [Jatropha curcas]
7 Hb_003060_060 0.0720362271 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
8 Hb_085781_020 0.0722375577 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
9 Hb_001343_040 0.0735654504 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
10 Hb_002815_030 0.0748210452 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
11 Hb_000613_050 0.0773032755 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
12 Hb_002639_080 0.0794308619 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
13 Hb_000592_030 0.0801119437 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
14 Hb_000369_130 0.0824349313 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
15 Hb_010174_110 0.0826822498 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
16 Hb_000684_290 0.0851209735 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
17 Hb_002477_090 0.0852476352 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
18 Hb_001199_100 0.0855506958 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
19 Hb_001821_090 0.0861794419 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
20 Hb_001913_060 0.0862440075 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_017358_040 Hb_017358_040 Hb_000069_120 Hb_000069_120 Hb_017358_040--Hb_000069_120 Hb_001761_130 Hb_001761_130 Hb_017358_040--Hb_001761_130 Hb_071130_010 Hb_071130_010 Hb_017358_040--Hb_071130_010 Hb_000230_260 Hb_000230_260 Hb_017358_040--Hb_000230_260 Hb_000723_220 Hb_000723_220 Hb_017358_040--Hb_000723_220 Hb_003060_060 Hb_003060_060 Hb_017358_040--Hb_003060_060 Hb_000069_120--Hb_000230_260 Hb_000069_120--Hb_071130_010 Hb_041327_010 Hb_041327_010 Hb_000069_120--Hb_041327_010 Hb_002639_080 Hb_002639_080 Hb_000069_120--Hb_002639_080 Hb_000537_050 Hb_000537_050 Hb_000069_120--Hb_000537_050 Hb_172632_110 Hb_172632_110 Hb_001761_130--Hb_172632_110 Hb_006831_040 Hb_006831_040 Hb_001761_130--Hb_006831_040 Hb_002477_090 Hb_002477_090 Hb_001761_130--Hb_002477_090 Hb_001232_010 Hb_001232_010 Hb_001761_130--Hb_001232_010 Hb_010174_110 Hb_010174_110 Hb_001761_130--Hb_010174_110 Hb_071130_010--Hb_000230_260 Hb_085781_020 Hb_085781_020 Hb_071130_010--Hb_085781_020 Hb_071130_010--Hb_002639_080 Hb_001188_020 Hb_001188_020 Hb_071130_010--Hb_001188_020 Hb_071130_010--Hb_041327_010 Hb_000230_260--Hb_041327_010 Hb_000230_260--Hb_003060_060 Hb_000230_260--Hb_085781_020 Hb_000412_010 Hb_000412_010 Hb_000230_260--Hb_000412_010 Hb_000723_220--Hb_000230_260 Hb_006637_020 Hb_006637_020 Hb_000723_220--Hb_006637_020 Hb_001195_470 Hb_001195_470 Hb_000723_220--Hb_001195_470 Hb_000723_220--Hb_085781_020 Hb_000723_220--Hb_071130_010 Hb_003060_060--Hb_000412_010 Hb_000395_070 Hb_000395_070 Hb_003060_060--Hb_000395_070 Hb_001529_040 Hb_001529_040 Hb_003060_060--Hb_001529_040 Hb_003060_060--Hb_085781_020 Hb_003060_060--Hb_041327_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.84737 7.96356 2.53804 6.63932 6.66947 9.41531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.728 3.9325 5.77315 11.6554 6.77357

CAGE analysis