Hb_071130_010

Information

Type -
Description -
Location Contig71130: 13960-30066
Sequence    

Annotation

kegg
ID pop:POPTR_0011s09640g
description hypothetical protein
nr
ID XP_012071060.1
description PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
swissprot
ID Q8GY23
description E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3
trembl
ID U5G1U7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s09640g PE=4 SV=1
Gene Ontology
ID GO:0004842
description e3 ubiquitin-protein ligase upl1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55303: 14089-23878 , PASA_asmbl_55304: 23879-24062 , PASA_asmbl_55305: 24063-24322 , PASA_asmbl_55306: 24323-24485 , PASA_asmbl_55307: 25422-25732 , PASA_asmbl_55309: 28712-29114
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_071130_010 0.0 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
2 Hb_000230_260 0.0467170449 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
3 Hb_085781_020 0.0509641212 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
4 Hb_000069_120 0.0541068693 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
5 Hb_002639_080 0.0563175483 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
6 Hb_001188_020 0.0636342218 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X1 [Jatropha curcas]
7 Hb_041327_010 0.0662128287 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
8 Hb_017358_040 0.0673154915 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
9 Hb_000412_010 0.0680439211 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_000340_490 0.0702198056 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
11 Hb_003060_060 0.0707684149 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
12 Hb_000537_050 0.0722930787 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
13 Hb_000723_220 0.0733332523 - - PREDICTED: uncharacterized protein LOC105642234 [Jatropha curcas]
14 Hb_007818_010 0.0733678486 - - PREDICTED: transcriptional corepressor SEUSS-like isoform X2 [Gossypium raimondii]
15 Hb_009296_040 0.0750192815 - - hypothetical protein L484_007435 [Morus notabilis]
16 Hb_000140_210 0.0785516068 - - sec10, putative [Ricinus communis]
17 Hb_004019_120 0.0794003283 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
18 Hb_011016_050 0.0795243421 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]
19 Hb_005656_040 0.0802186828 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
20 Hb_001105_160 0.0803396003 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]

Gene co-expression network

sample Hb_071130_010 Hb_071130_010 Hb_000230_260 Hb_000230_260 Hb_071130_010--Hb_000230_260 Hb_085781_020 Hb_085781_020 Hb_071130_010--Hb_085781_020 Hb_000069_120 Hb_000069_120 Hb_071130_010--Hb_000069_120 Hb_002639_080 Hb_002639_080 Hb_071130_010--Hb_002639_080 Hb_001188_020 Hb_001188_020 Hb_071130_010--Hb_001188_020 Hb_041327_010 Hb_041327_010 Hb_071130_010--Hb_041327_010 Hb_000230_260--Hb_000069_120 Hb_000230_260--Hb_041327_010 Hb_003060_060 Hb_003060_060 Hb_000230_260--Hb_003060_060 Hb_000230_260--Hb_085781_020 Hb_000412_010 Hb_000412_010 Hb_000230_260--Hb_000412_010 Hb_000140_210 Hb_000140_210 Hb_085781_020--Hb_000140_210 Hb_000066_170 Hb_000066_170 Hb_085781_020--Hb_000066_170 Hb_085781_020--Hb_003060_060 Hb_085781_020--Hb_002639_080 Hb_000069_120--Hb_041327_010 Hb_017358_040 Hb_017358_040 Hb_000069_120--Hb_017358_040 Hb_000069_120--Hb_002639_080 Hb_000537_050 Hb_000537_050 Hb_000069_120--Hb_000537_050 Hb_002639_080--Hb_001188_020 Hb_002639_080--Hb_041327_010 Hb_004143_160 Hb_004143_160 Hb_002639_080--Hb_004143_160 Hb_007632_010 Hb_007632_010 Hb_002639_080--Hb_007632_010 Hb_005656_040 Hb_005656_040 Hb_001188_020--Hb_005656_040 Hb_043362_010 Hb_043362_010 Hb_001188_020--Hb_043362_010 Hb_007994_010 Hb_007994_010 Hb_001188_020--Hb_007994_010 Hb_001188_020--Hb_000537_050 Hb_012286_040 Hb_012286_040 Hb_041327_010--Hb_012286_040 Hb_000261_480 Hb_000261_480 Hb_041327_010--Hb_000261_480 Hb_041327_010--Hb_000537_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.46615 14.3762 4.75074 11.6328 9.64605 12.1612
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.0308 7.03425 10.1751 16.3578 11.5239

CAGE analysis