Hb_007994_010

Information

Type transcription factor
Description TF Family: FAR1
Location Contig7994: 3696-7076
Sequence    

Annotation

kegg
ID pop:POPTR_0006s02150g
description POPTRDRAFT_560233; far-red impaired responsive family protein
nr
ID XP_012092528.1
description PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 [Jatropha curcas]
swissprot
ID Q9LIE5
description Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana GN=FHY3 PE=1 SV=1
trembl
ID A0A067JCL9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05377 PE=4 SV=1
Gene Ontology
ID GO:0003700
description protein far-red elongated hypocotyl 3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58643: 3483-6629 , PASA_asmbl_58644: 6647-12107
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007994_010 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 [Jatropha curcas]
2 Hb_135572_010 0.0522170325 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
3 Hb_012760_100 0.0586281599 - - Pre-rRNA-processing protein ESF1, putative [Ricinus communis]
4 Hb_004143_160 0.0601611014 - - SAB, putative [Ricinus communis]
5 Hb_001381_050 0.0650914893 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
6 Hb_000809_230 0.0659594158 - - PREDICTED: uncharacterized protein LOC105639681 isoform X1 [Jatropha curcas]
7 Hb_001188_020 0.0686077572 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X1 [Jatropha curcas]
8 Hb_001377_350 0.0731119576 - - PREDICTED: exportin-2 [Jatropha curcas]
9 Hb_002639_080 0.0742832729 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
10 Hb_005215_010 0.0763778576 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
11 Hb_011231_020 0.0767381973 - - PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 isoform X2 [Jatropha curcas]
12 Hb_001377_100 0.076994151 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
13 Hb_001341_180 0.0772415703 - - PREDICTED: transmembrane protein 209 [Jatropha curcas]
14 Hb_008484_060 0.0776954059 - - PREDICTED: allantoate deiminase isoform X3 [Populus euphratica]
15 Hb_004048_120 0.0778873725 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
16 Hb_004679_030 0.0795640117 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
17 Hb_003544_140 0.0806542164 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]
18 Hb_000537_050 0.0813016583 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
19 Hb_000183_050 0.0816362351 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
20 Hb_004327_040 0.0835697568 - - PREDICTED: tetratricopeptide repeat protein 27 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_007994_010 Hb_007994_010 Hb_135572_010 Hb_135572_010 Hb_007994_010--Hb_135572_010 Hb_012760_100 Hb_012760_100 Hb_007994_010--Hb_012760_100 Hb_004143_160 Hb_004143_160 Hb_007994_010--Hb_004143_160 Hb_001381_050 Hb_001381_050 Hb_007994_010--Hb_001381_050 Hb_000809_230 Hb_000809_230 Hb_007994_010--Hb_000809_230 Hb_001188_020 Hb_001188_020 Hb_007994_010--Hb_001188_020 Hb_001377_100 Hb_001377_100 Hb_135572_010--Hb_001377_100 Hb_135572_010--Hb_004143_160 Hb_000358_050 Hb_000358_050 Hb_135572_010--Hb_000358_050 Hb_000363_300 Hb_000363_300 Hb_135572_010--Hb_000363_300 Hb_000922_030 Hb_000922_030 Hb_135572_010--Hb_000922_030 Hb_009976_020 Hb_009976_020 Hb_012760_100--Hb_009976_020 Hb_004182_050 Hb_004182_050 Hb_012760_100--Hb_004182_050 Hb_056691_060 Hb_056691_060 Hb_012760_100--Hb_056691_060 Hb_003734_010 Hb_003734_010 Hb_012760_100--Hb_003734_010 Hb_005215_010 Hb_005215_010 Hb_012760_100--Hb_005215_010 Hb_004048_120 Hb_004048_120 Hb_004143_160--Hb_004048_120 Hb_004143_160--Hb_000358_050 Hb_002025_330 Hb_002025_330 Hb_004143_160--Hb_002025_330 Hb_002639_080 Hb_002639_080 Hb_004143_160--Hb_002639_080 Hb_001085_290 Hb_001085_290 Hb_001381_050--Hb_001085_290 Hb_005402_040 Hb_005402_040 Hb_001381_050--Hb_005402_040 Hb_000066_150 Hb_000066_150 Hb_001381_050--Hb_000066_150 Hb_000088_050 Hb_000088_050 Hb_001381_050--Hb_000088_050 Hb_001341_180 Hb_001341_180 Hb_001381_050--Hb_001341_180 Hb_004679_030 Hb_004679_030 Hb_000809_230--Hb_004679_030 Hb_001377_350 Hb_001377_350 Hb_000809_230--Hb_001377_350 Hb_003544_050 Hb_003544_050 Hb_000809_230--Hb_003544_050 Hb_002749_060 Hb_002749_060 Hb_000809_230--Hb_002749_060 Hb_009296_040 Hb_009296_040 Hb_000809_230--Hb_009296_040 Hb_001188_020--Hb_002639_080 Hb_005656_040 Hb_005656_040 Hb_001188_020--Hb_005656_040 Hb_071130_010 Hb_071130_010 Hb_001188_020--Hb_071130_010 Hb_043362_010 Hb_043362_010 Hb_001188_020--Hb_043362_010 Hb_000537_050 Hb_000537_050 Hb_001188_020--Hb_000537_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.23421 12.8525 8.49313 12.2224 10.1683 16.4855
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.11822 5.37934 8.87296 15.3683 19.6528

CAGE analysis