Hb_005656_040

Information

Type desease resistance
Description Gene Name: T2SE
Location Contig5656: 19639-29780
Sequence    

Annotation

kegg
ID rcu:RCOM_0298500
description ATP-dependent RNA helicase, putative
nr
ID XP_002527133.1
description ATP-dependent RNA helicase, putative [Ricinus communis]
swissprot
ID Q92620
description Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo sapiens GN=DHX38 PE=1 SV=2
trembl
ID B9SMB4
description ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_0298500 PE=4 SV=1
Gene Ontology
ID GO:0003676
description pre-mrna-splicing factor atp-dependent rna helicase prp16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49008: 19412-29551 , PASA_asmbl_49009: 21534-21635
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005656_040 0.0 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
2 Hb_001188_020 0.0598506734 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X1 [Jatropha curcas]
3 Hb_000412_010 0.0660561403 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_002311_100 0.0669826481 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Jatropha curcas]
5 Hb_001628_070 0.0728426173 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_009767_080 0.0728777702 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
7 Hb_000206_040 0.0747764717 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
8 Hb_000665_230 0.074825243 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
9 Hb_001821_090 0.0751877091 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
10 Hb_002639_080 0.075758614 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
11 Hb_000069_410 0.0768665622 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
12 Hb_000556_220 0.0769540153 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
13 Hb_000321_150 0.0769622841 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
14 Hb_003729_030 0.0774632954 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
15 Hb_002784_110 0.0776237094 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
16 Hb_002333_050 0.0792728314 - - PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]
17 Hb_188063_010 0.0794234565 - - hypothetical protein RCOM_1469330 [Ricinus communis]
18 Hb_001913_060 0.0795798402 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
19 Hb_000037_220 0.0801785172 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
20 Hb_071130_010 0.0802186828 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005656_040 Hb_005656_040 Hb_001188_020 Hb_001188_020 Hb_005656_040--Hb_001188_020 Hb_000412_010 Hb_000412_010 Hb_005656_040--Hb_000412_010 Hb_002311_100 Hb_002311_100 Hb_005656_040--Hb_002311_100 Hb_001628_070 Hb_001628_070 Hb_005656_040--Hb_001628_070 Hb_009767_080 Hb_009767_080 Hb_005656_040--Hb_009767_080 Hb_000206_040 Hb_000206_040 Hb_005656_040--Hb_000206_040 Hb_002639_080 Hb_002639_080 Hb_001188_020--Hb_002639_080 Hb_071130_010 Hb_071130_010 Hb_001188_020--Hb_071130_010 Hb_043362_010 Hb_043362_010 Hb_001188_020--Hb_043362_010 Hb_007994_010 Hb_007994_010 Hb_001188_020--Hb_007994_010 Hb_000537_050 Hb_000537_050 Hb_001188_020--Hb_000537_050 Hb_003060_060 Hb_003060_060 Hb_000412_010--Hb_003060_060 Hb_000395_070 Hb_000395_070 Hb_000412_010--Hb_000395_070 Hb_159558_010 Hb_159558_010 Hb_000412_010--Hb_159558_010 Hb_001550_060 Hb_001550_060 Hb_000412_010--Hb_001550_060 Hb_000412_010--Hb_001628_070 Hb_000230_260 Hb_000230_260 Hb_000412_010--Hb_000230_260 Hb_000556_220 Hb_000556_220 Hb_002311_100--Hb_000556_220 Hb_000723_220 Hb_000723_220 Hb_002311_100--Hb_000723_220 Hb_000094_310 Hb_000094_310 Hb_002311_100--Hb_000094_310 Hb_009898_010 Hb_009898_010 Hb_002311_100--Hb_009898_010 Hb_000696_050 Hb_000696_050 Hb_002311_100--Hb_000696_050 Hb_004705_020 Hb_004705_020 Hb_001628_070--Hb_004705_020 Hb_006531_020 Hb_006531_020 Hb_001628_070--Hb_006531_020 Hb_004586_290 Hb_004586_290 Hb_001628_070--Hb_004586_290 Hb_000003_100 Hb_000003_100 Hb_001628_070--Hb_000003_100 Hb_000024_040 Hb_000024_040 Hb_001628_070--Hb_000024_040 Hb_019430_020 Hb_019430_020 Hb_009767_080--Hb_019430_020 Hb_000890_050 Hb_000890_050 Hb_009767_080--Hb_000890_050 Hb_000684_250 Hb_000684_250 Hb_009767_080--Hb_000684_250 Hb_009767_080--Hb_009898_010 Hb_000321_150 Hb_000321_150 Hb_009767_080--Hb_000321_150 Hb_000069_470 Hb_000069_470 Hb_009767_080--Hb_000069_470 Hb_008494_010 Hb_008494_010 Hb_000206_040--Hb_008494_010 Hb_001913_060 Hb_001913_060 Hb_000206_040--Hb_001913_060 Hb_001821_090 Hb_001821_090 Hb_000206_040--Hb_001821_090 Hb_002784_110 Hb_002784_110 Hb_000206_040--Hb_002784_110 Hb_000206_040--Hb_002311_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.83143 21.8791 5.7785 10.5244 12.0812 16.0299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.61879 5.53952 12.2473 16.3977 15.3496

CAGE analysis