Hb_008494_010

Information

Type -
Description -
Location Contig8494: 22593-24011
Sequence    

Annotation

kegg
ID pop:POPTR_0001s29250g
description POPTRDRAFT_550077; hypothetical protein
nr
ID XP_012074568.1
description PREDICTED: uncharacterized protein LOC105636015 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KI88
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09918 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008494_010 0.0 - - PREDICTED: uncharacterized protein LOC105636015 [Jatropha curcas]
2 Hb_000206_040 0.0718049166 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
3 Hb_005656_040 0.0804826898 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
4 Hb_002311_100 0.0909887264 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Jatropha curcas]
5 Hb_000069_410 0.0911733648 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
6 Hb_000540_060 0.0986807668 - - PREDICTED: uncharacterized protein LOC105628177 [Jatropha curcas]
7 Hb_001913_060 0.1011908788 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
8 Hb_000260_070 0.1018514237 - - kinase, putative [Ricinus communis]
9 Hb_001821_090 0.1027039399 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
10 Hb_188063_010 0.1033452752 - - hypothetical protein RCOM_1469330 [Ricinus communis]
11 Hb_001699_280 0.1036827823 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]
12 Hb_000723_220 0.103967303 - - PREDICTED: uncharacterized protein LOC105642234 [Jatropha curcas]
13 Hb_001188_020 0.1052874459 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X1 [Jatropha curcas]
14 Hb_001575_010 0.105845392 - - PREDICTED: pumilio homolog 6, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_011828_030 0.1060939697 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
16 Hb_000836_020 0.1063897711 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
17 Hb_005701_070 0.1064076352 - - PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Jatropha curcas]
18 Hb_003581_170 0.1069668287 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
19 Hb_006637_020 0.1074769381 - - PREDICTED: uncharacterized protein LOC105642234 [Jatropha curcas]
20 Hb_009898_010 0.1075709367 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]

Gene co-expression network

sample Hb_008494_010 Hb_008494_010 Hb_000206_040 Hb_000206_040 Hb_008494_010--Hb_000206_040 Hb_005656_040 Hb_005656_040 Hb_008494_010--Hb_005656_040 Hb_002311_100 Hb_002311_100 Hb_008494_010--Hb_002311_100 Hb_000069_410 Hb_000069_410 Hb_008494_010--Hb_000069_410 Hb_000540_060 Hb_000540_060 Hb_008494_010--Hb_000540_060 Hb_001913_060 Hb_001913_060 Hb_008494_010--Hb_001913_060 Hb_000206_040--Hb_005656_040 Hb_000206_040--Hb_001913_060 Hb_001821_090 Hb_001821_090 Hb_000206_040--Hb_001821_090 Hb_002784_110 Hb_002784_110 Hb_000206_040--Hb_002784_110 Hb_000206_040--Hb_002311_100 Hb_001188_020 Hb_001188_020 Hb_005656_040--Hb_001188_020 Hb_000412_010 Hb_000412_010 Hb_005656_040--Hb_000412_010 Hb_005656_040--Hb_002311_100 Hb_001628_070 Hb_001628_070 Hb_005656_040--Hb_001628_070 Hb_009767_080 Hb_009767_080 Hb_005656_040--Hb_009767_080 Hb_000556_220 Hb_000556_220 Hb_002311_100--Hb_000556_220 Hb_000723_220 Hb_000723_220 Hb_002311_100--Hb_000723_220 Hb_000094_310 Hb_000094_310 Hb_002311_100--Hb_000094_310 Hb_009898_010 Hb_009898_010 Hb_002311_100--Hb_009898_010 Hb_000696_050 Hb_000696_050 Hb_002311_100--Hb_000696_050 Hb_000069_410--Hb_001821_090 Hb_001575_010 Hb_001575_010 Hb_000069_410--Hb_001575_010 Hb_003581_170 Hb_003581_170 Hb_000069_410--Hb_003581_170 Hb_023226_080 Hb_023226_080 Hb_000069_410--Hb_023226_080 Hb_001699_280 Hb_001699_280 Hb_000069_410--Hb_001699_280 Hb_000105_040 Hb_000105_040 Hb_000069_410--Hb_000105_040 Hb_001967_030 Hb_001967_030 Hb_000540_060--Hb_001967_030 Hb_025194_040 Hb_025194_040 Hb_000540_060--Hb_025194_040 Hb_000540_060--Hb_002784_110 Hb_007576_120 Hb_007576_120 Hb_000540_060--Hb_007576_120 Hb_005496_110 Hb_005496_110 Hb_000540_060--Hb_005496_110 Hb_001472_090 Hb_001472_090 Hb_000540_060--Hb_001472_090 Hb_001913_060--Hb_002784_110 Hb_001913_060--Hb_001821_090 Hb_002400_240 Hb_002400_240 Hb_001913_060--Hb_002400_240 Hb_002107_070 Hb_002107_070 Hb_001913_060--Hb_002107_070 Hb_000446_120 Hb_000446_120 Hb_001913_060--Hb_000446_120 Hb_002329_040 Hb_002329_040 Hb_001913_060--Hb_002329_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.034 135.842 15.32 63.5871 60.7749 94.3616
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.6147 23.6031 53.9714 90.7619 73.0975

CAGE analysis