Hb_000540_060

Information

Type -
Description -
Location Contig540: 58596-62762
Sequence    

Annotation

kegg
ID rcu:RCOM_1264030
description nfrkb, putative
nr
ID XP_012064934.1
description PREDICTED: uncharacterized protein LOC105628177 [Jatropha curcas]
swissprot
ID Q6PIJ4
description Nuclear factor related to kappa-B-binding protein OS=Mus musculus GN=Nfrkb PE=2 SV=1
trembl
ID A0A067LHT3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05622 PE=4 SV=1
Gene Ontology
ID GO:0031011
description isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47795: 57190-63092 , PASA_asmbl_47796: 57190-63092
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000540_060 0.0 - - PREDICTED: uncharacterized protein LOC105628177 [Jatropha curcas]
2 Hb_001967_030 0.0605421913 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
3 Hb_025194_040 0.0683033964 - - PREDICTED: uncharacterized protein LOC105644854 isoform X2 [Jatropha curcas]
4 Hb_002784_110 0.0772740344 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
5 Hb_007576_120 0.0792379808 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
6 Hb_005496_110 0.0817579012 - - PREDICTED: uncharacterized protein LOC105107584 [Populus euphratica]
7 Hb_001472_090 0.0833399005 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X1 [Jatropha curcas]
8 Hb_005701_070 0.0836313775 - - PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Jatropha curcas]
9 Hb_005539_090 0.0837396011 transcription factor TF Family: PHD PREDICTED: methyl-CpG-binding domain-containing protein 9 isoform X1 [Jatropha curcas]
10 Hb_014267_010 0.0851338208 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
11 Hb_000960_100 0.0858695718 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
12 Hb_009898_010 0.085989736 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
13 Hb_000321_150 0.0867086155 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
14 Hb_000035_290 0.0868968662 - - RNA recognition motif-containing family protein [Populus trichocarpa]
15 Hb_018133_050 0.0879303463 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
16 Hb_001913_060 0.0887352728 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
17 Hb_001268_350 0.0888697904 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105115846 [Populus euphratica]
18 Hb_004108_100 0.0915617238 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X2 [Jatropha curcas]
19 Hb_009767_080 0.0927360784 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
20 Hb_000959_040 0.0937245268 - - PREDICTED: uncharacterized protein LOC105636570 [Jatropha curcas]

Gene co-expression network

sample Hb_000540_060 Hb_000540_060 Hb_001967_030 Hb_001967_030 Hb_000540_060--Hb_001967_030 Hb_025194_040 Hb_025194_040 Hb_000540_060--Hb_025194_040 Hb_002784_110 Hb_002784_110 Hb_000540_060--Hb_002784_110 Hb_007576_120 Hb_007576_120 Hb_000540_060--Hb_007576_120 Hb_005496_110 Hb_005496_110 Hb_000540_060--Hb_005496_110 Hb_001472_090 Hb_001472_090 Hb_000540_060--Hb_001472_090 Hb_014267_010 Hb_014267_010 Hb_001967_030--Hb_014267_010 Hb_000960_100 Hb_000960_100 Hb_001967_030--Hb_000960_100 Hb_000890_050 Hb_000890_050 Hb_001967_030--Hb_000890_050 Hb_183963_030 Hb_183963_030 Hb_001967_030--Hb_183963_030 Hb_000321_150 Hb_000321_150 Hb_001967_030--Hb_000321_150 Hb_000035_290 Hb_000035_290 Hb_025194_040--Hb_000035_290 Hb_025194_040--Hb_002784_110 Hb_000343_120 Hb_000343_120 Hb_025194_040--Hb_000343_120 Hb_000166_130 Hb_000166_130 Hb_025194_040--Hb_000166_130 Hb_009476_040 Hb_009476_040 Hb_025194_040--Hb_009476_040 Hb_000446_120 Hb_000446_120 Hb_002784_110--Hb_000446_120 Hb_001913_060 Hb_001913_060 Hb_002784_110--Hb_001913_060 Hb_000788_070 Hb_000788_070 Hb_002784_110--Hb_000788_070 Hb_002784_110--Hb_000035_290 Hb_000183_020 Hb_000183_020 Hb_002784_110--Hb_000183_020 Hb_004543_030 Hb_004543_030 Hb_007576_120--Hb_004543_030 Hb_034243_020 Hb_034243_020 Hb_007576_120--Hb_034243_020 Hb_001493_040 Hb_001493_040 Hb_007576_120--Hb_001493_040 Hb_000139_090 Hb_000139_090 Hb_007576_120--Hb_000139_090 Hb_005539_090 Hb_005539_090 Hb_007576_120--Hb_005539_090 Hb_000012_140 Hb_000012_140 Hb_007576_120--Hb_000012_140 Hb_005496_110--Hb_000035_290 Hb_005496_110--Hb_000788_070 Hb_004108_100 Hb_004108_100 Hb_005496_110--Hb_004108_100 Hb_001080_230 Hb_001080_230 Hb_005496_110--Hb_001080_230 Hb_000170_150 Hb_000170_150 Hb_005496_110--Hb_000170_150 Hb_005496_110--Hb_002784_110 Hb_004228_010 Hb_004228_010 Hb_001472_090--Hb_004228_010 Hb_000574_070 Hb_000574_070 Hb_001472_090--Hb_000574_070 Hb_000803_260 Hb_000803_260 Hb_001472_090--Hb_000803_260 Hb_001472_090--Hb_014267_010 Hb_000684_250 Hb_000684_250 Hb_001472_090--Hb_000684_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.515 28.3619 4.31062 9.75945 18.2797 23.7586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.059 7.68685 14.7882 13.5266 18.1791

CAGE analysis