Hb_009476_040

Information

Type -
Description -
Location Contig9476: 26383-32328
Sequence    

Annotation

kegg
ID rcu:RCOM_0436250
description hypothetical protein
nr
ID XP_002530888.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6NTR1
description Methyltransferase-like protein 13 OS=Xenopus laevis GN=mettl13 PE=2 SV=1
trembl
ID B9SY19
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0436250 PE=4 SV=1
Gene Ontology
ID GO:0016740
description methyltransferase-like protein 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63281: 30643-31597 , PASA_asmbl_63282: 31653-32064
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009476_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000183_020 0.0641691138 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
3 Hb_000922_370 0.0658830345 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
4 Hb_025194_040 0.0703027174 - - PREDICTED: uncharacterized protein LOC105644854 isoform X2 [Jatropha curcas]
5 Hb_074969_010 0.0789061579 - - hypothetical protein JCGZ_23339 [Jatropha curcas]
6 Hb_007426_130 0.0801732331 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
7 Hb_002784_110 0.0806045004 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
8 Hb_000035_290 0.0814669605 - - RNA recognition motif-containing family protein [Populus trichocarpa]
9 Hb_002107_070 0.0817342412 - - hypothetical protein RCOM_1598630 [Ricinus communis]
10 Hb_003362_070 0.0818229957 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
11 Hb_013399_070 0.0834697611 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
12 Hb_032631_040 0.0847465415 - - PREDICTED: uncharacterized protein LOC105638769 [Jatropha curcas]
13 Hb_001199_100 0.0847866703 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
14 Hb_009193_120 0.0870664849 desease resistance Gene Name: AAA_22 PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
15 Hb_002329_040 0.087163282 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
16 Hb_003044_020 0.0883485161 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
17 Hb_000446_120 0.0887700889 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
18 Hb_001913_060 0.0887929336 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
19 Hb_001821_090 0.0895200738 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
20 Hb_001472_090 0.0896549603 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_009476_040 Hb_009476_040 Hb_000183_020 Hb_000183_020 Hb_009476_040--Hb_000183_020 Hb_000922_370 Hb_000922_370 Hb_009476_040--Hb_000922_370 Hb_025194_040 Hb_025194_040 Hb_009476_040--Hb_025194_040 Hb_074969_010 Hb_074969_010 Hb_009476_040--Hb_074969_010 Hb_007426_130 Hb_007426_130 Hb_009476_040--Hb_007426_130 Hb_002784_110 Hb_002784_110 Hb_009476_040--Hb_002784_110 Hb_002329_040 Hb_002329_040 Hb_000183_020--Hb_002329_040 Hb_003044_020 Hb_003044_020 Hb_000183_020--Hb_003044_020 Hb_001195_320 Hb_001195_320 Hb_000183_020--Hb_001195_320 Hb_003362_070 Hb_003362_070 Hb_000183_020--Hb_003362_070 Hb_000166_130 Hb_000166_130 Hb_000183_020--Hb_000166_130 Hb_000183_020--Hb_000922_370 Hb_000922_370--Hb_003044_020 Hb_000922_370--Hb_007426_130 Hb_000922_370--Hb_002329_040 Hb_000922_370--Hb_003362_070 Hb_002174_020 Hb_002174_020 Hb_000922_370--Hb_002174_020 Hb_000160_290 Hb_000160_290 Hb_000922_370--Hb_000160_290 Hb_000035_290 Hb_000035_290 Hb_025194_040--Hb_000035_290 Hb_025194_040--Hb_002784_110 Hb_000343_120 Hb_000343_120 Hb_025194_040--Hb_000343_120 Hb_025194_040--Hb_000166_130 Hb_000540_060 Hb_000540_060 Hb_025194_040--Hb_000540_060 Hb_000563_640 Hb_000563_640 Hb_074969_010--Hb_000563_640 Hb_002107_070 Hb_002107_070 Hb_074969_010--Hb_002107_070 Hb_074969_010--Hb_000922_370 Hb_000236_220 Hb_000236_220 Hb_074969_010--Hb_000236_220 Hb_001454_280 Hb_001454_280 Hb_074969_010--Hb_001454_280 Hb_006252_020 Hb_006252_020 Hb_074969_010--Hb_006252_020 Hb_007426_130--Hb_002329_040 Hb_009615_170 Hb_009615_170 Hb_007426_130--Hb_009615_170 Hb_007426_130--Hb_000183_020 Hb_001821_090 Hb_001821_090 Hb_007426_130--Hb_001821_090 Hb_000261_030 Hb_000261_030 Hb_007426_130--Hb_000261_030 Hb_000446_120 Hb_000446_120 Hb_002784_110--Hb_000446_120 Hb_001913_060 Hb_001913_060 Hb_002784_110--Hb_001913_060 Hb_000788_070 Hb_000788_070 Hb_002784_110--Hb_000788_070 Hb_002784_110--Hb_000035_290 Hb_002784_110--Hb_000183_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.64036 2.98956 0.742097 1.88719 2.32894 3.8094
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.37481 1.44239 1.51575 2.5013 2.29561

CAGE analysis