Hb_001913_060

Information

Type -
Description -
Location Contig1913: 21414-24871
Sequence    

Annotation

kegg
ID rcu:RCOM_0386800
description spliceosomal protein sap, putative
nr
ID XP_012073366.1
description PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
swissprot
ID Q921M3
description Splicing factor 3B subunit 3 OS=Mus musculus GN=Sf3b3 PE=2 SV=1
trembl
ID A0A067LMR5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06631 PE=4 SV=1
Gene Ontology
ID GO:0005634
description splicing factor 3b subunit 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19099: 22585-26178 , PASA_asmbl_19100: 22722-25693 , PASA_asmbl_19101: 24850-26178
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001913_060 0.0 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
2 Hb_002784_110 0.0632853212 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
3 Hb_001821_090 0.0656883328 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
4 Hb_002400_240 0.0659088193 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
5 Hb_002107_070 0.0731912884 - - hypothetical protein RCOM_1598630 [Ricinus communis]
6 Hb_000446_120 0.0755435186 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
7 Hb_002329_040 0.0774759533 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
8 Hb_000206_040 0.0781953472 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
9 Hb_000922_370 0.0793637779 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
10 Hb_005656_040 0.0795798402 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
11 Hb_014267_010 0.0801192037 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
12 Hb_003060_060 0.0807016587 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
13 Hb_025194_040 0.0807324684 - - PREDICTED: uncharacterized protein LOC105644854 isoform X2 [Jatropha curcas]
14 Hb_000395_070 0.0823013528 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
15 Hb_001575_010 0.0825922105 - - PREDICTED: pumilio homolog 6, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_001268_350 0.0832675557 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105115846 [Populus euphratica]
17 Hb_001967_030 0.0833110089 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
18 Hb_000574_070 0.0837886523 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 35 [Jatropha curcas]
19 Hb_000183_020 0.0840362333 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
20 Hb_002740_110 0.0844112471 - - PREDICTED: phytochrome A [Jatropha curcas]

Gene co-expression network

sample Hb_001913_060 Hb_001913_060 Hb_002784_110 Hb_002784_110 Hb_001913_060--Hb_002784_110 Hb_001821_090 Hb_001821_090 Hb_001913_060--Hb_001821_090 Hb_002400_240 Hb_002400_240 Hb_001913_060--Hb_002400_240 Hb_002107_070 Hb_002107_070 Hb_001913_060--Hb_002107_070 Hb_000446_120 Hb_000446_120 Hb_001913_060--Hb_000446_120 Hb_002329_040 Hb_002329_040 Hb_001913_060--Hb_002329_040 Hb_002784_110--Hb_000446_120 Hb_025194_040 Hb_025194_040 Hb_002784_110--Hb_025194_040 Hb_000788_070 Hb_000788_070 Hb_002784_110--Hb_000788_070 Hb_000035_290 Hb_000035_290 Hb_002784_110--Hb_000035_290 Hb_000183_020 Hb_000183_020 Hb_002784_110--Hb_000183_020 Hb_000069_410 Hb_000069_410 Hb_001821_090--Hb_000069_410 Hb_009615_170 Hb_009615_170 Hb_001821_090--Hb_009615_170 Hb_001821_090--Hb_002107_070 Hb_028487_010 Hb_028487_010 Hb_001821_090--Hb_028487_010 Hb_003058_060 Hb_003058_060 Hb_001821_090--Hb_003058_060 Hb_000579_230 Hb_000579_230 Hb_001821_090--Hb_000579_230 Hb_002301_080 Hb_002301_080 Hb_002400_240--Hb_002301_080 Hb_116929_010 Hb_116929_010 Hb_002400_240--Hb_116929_010 Hb_030627_060 Hb_030627_060 Hb_002400_240--Hb_030627_060 Hb_117552_010 Hb_117552_010 Hb_002400_240--Hb_117552_010 Hb_005701_070 Hb_005701_070 Hb_002400_240--Hb_005701_070 Hb_104061_020 Hb_104061_020 Hb_002107_070--Hb_104061_020 Hb_002107_070--Hb_002329_040 Hb_000369_130 Hb_000369_130 Hb_002107_070--Hb_000369_130 Hb_002107_070--Hb_028487_010 Hb_007635_030 Hb_007635_030 Hb_002107_070--Hb_007635_030 Hb_000446_120--Hb_005701_070 Hb_000446_120--Hb_030627_060 Hb_000446_120--Hb_002329_040 Hb_000740_100 Hb_000740_100 Hb_000446_120--Hb_000740_100 Hb_000446_120--Hb_025194_040 Hb_027380_140 Hb_027380_140 Hb_002329_040--Hb_027380_140 Hb_002329_040--Hb_000740_100 Hb_012395_140 Hb_012395_140 Hb_002329_040--Hb_012395_140 Hb_001195_320 Hb_001195_320 Hb_002329_040--Hb_001195_320 Hb_002329_040--Hb_000183_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.1704 38.9889 9.43443 19.571 33.5215 38.491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.8144 10.9531 27.7423 36.3189 23.8421

CAGE analysis