Hb_003058_060

Information

Type -
Description -
Location Contig3058: 33301-67483
Sequence    

Annotation

kegg
ID pop:POPTR_0001s28120g
description POPTRDRAFT_1068554; hypothetical protein
nr
ID XP_012065862.1
description PREDICTED: proteasome-associated protein ECM29 homolog [Jatropha curcas]
swissprot
ID Q5VYK3
description Proteasome-associated protein ECM29 homolog OS=Homo sapiens GN=ECM29 PE=1 SV=2
trembl
ID A0A067L447
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22744 PE=4 SV=1
Gene Ontology
ID GO:0000502
description proteasome-associated protein ecm29 homolog isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32300: 35099-46775 , PASA_asmbl_32301: 46802-47258 , PASA_asmbl_32302: 47411-67475
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003058_060 0.0 - - PREDICTED: proteasome-associated protein ECM29 homolog [Jatropha curcas]
2 Hb_000369_130 0.0579871173 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
3 Hb_001821_090 0.0587041601 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
4 Hb_002107_070 0.0613394575 - - hypothetical protein RCOM_1598630 [Ricinus communis]
5 Hb_002170_050 0.0648333962 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09060 [Jatropha curcas]
6 Hb_000579_230 0.0657249868 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
7 Hb_104061_020 0.0707451251 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
8 Hb_028487_010 0.0715071711 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
9 Hb_000012_260 0.0717992495 - - Far upstream element-binding 2 [Gossypium arboreum]
10 Hb_000307_210 0.0737254455 - - Transportin 1 isoform 1 [Theobroma cacao]
11 Hb_002477_090 0.0748268925 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
12 Hb_009615_170 0.0750112785 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
13 Hb_004884_150 0.0751965741 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
14 Hb_023226_080 0.0788149234 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
15 Hb_017862_020 0.0793262381 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
16 Hb_000656_380 0.0804869512 - - PREDICTED: exportin-T [Jatropha curcas]
17 Hb_159558_010 0.0816842093 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
18 Hb_000069_410 0.081693955 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
19 Hb_004676_010 0.0820252106 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Jatropha curcas]
20 Hb_003060_060 0.0834142793 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]

Gene co-expression network

sample Hb_003058_060 Hb_003058_060 Hb_000369_130 Hb_000369_130 Hb_003058_060--Hb_000369_130 Hb_001821_090 Hb_001821_090 Hb_003058_060--Hb_001821_090 Hb_002107_070 Hb_002107_070 Hb_003058_060--Hb_002107_070 Hb_002170_050 Hb_002170_050 Hb_003058_060--Hb_002170_050 Hb_000579_230 Hb_000579_230 Hb_003058_060--Hb_000579_230 Hb_104061_020 Hb_104061_020 Hb_003058_060--Hb_104061_020 Hb_000369_130--Hb_002107_070 Hb_006355_090 Hb_006355_090 Hb_000369_130--Hb_006355_090 Hb_000369_130--Hb_001821_090 Hb_005143_030 Hb_005143_030 Hb_000369_130--Hb_005143_030 Hb_001621_130 Hb_001621_130 Hb_000369_130--Hb_001621_130 Hb_000069_410 Hb_000069_410 Hb_001821_090--Hb_000069_410 Hb_009615_170 Hb_009615_170 Hb_001821_090--Hb_009615_170 Hb_001821_090--Hb_002107_070 Hb_028487_010 Hb_028487_010 Hb_001821_090--Hb_028487_010 Hb_001821_090--Hb_000579_230 Hb_002107_070--Hb_104061_020 Hb_002329_040 Hb_002329_040 Hb_002107_070--Hb_002329_040 Hb_002107_070--Hb_028487_010 Hb_007635_030 Hb_007635_030 Hb_002107_070--Hb_007635_030 Hb_000412_010 Hb_000412_010 Hb_002170_050--Hb_000412_010 Hb_002097_050 Hb_002097_050 Hb_002170_050--Hb_002097_050 Hb_003060_060 Hb_003060_060 Hb_002170_050--Hb_003060_060 Hb_002170_050--Hb_002107_070 Hb_001575_010 Hb_001575_010 Hb_002170_050--Hb_001575_010 Hb_012395_140 Hb_012395_140 Hb_000579_230--Hb_012395_140 Hb_002815_030 Hb_002815_030 Hb_000579_230--Hb_002815_030 Hb_000395_070 Hb_000395_070 Hb_000579_230--Hb_000395_070 Hb_000579_230--Hb_104061_020 Hb_009270_020 Hb_009270_020 Hb_000579_230--Hb_009270_020 Hb_004676_010 Hb_004676_010 Hb_000579_230--Hb_004676_010 Hb_104061_020--Hb_002329_040 Hb_010053_030 Hb_010053_030 Hb_104061_020--Hb_010053_030 Hb_000740_100 Hb_000740_100 Hb_104061_020--Hb_000740_100 Hb_009175_020 Hb_009175_020 Hb_104061_020--Hb_009175_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.496 22.3817 10.0013 9.8998 17.0529 20.7201
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.9621 11.0403 11.3874 24.8036 12.4767

CAGE analysis