Hb_002097_050

Information

Type -
Description -
Location Contig2097: 147285-158762
Sequence    

Annotation

kegg
ID pop:POPTR_0006s12280g
description hypothetical protein
nr
ID XP_012082482.1
description PREDICTED: protein fluG isoform X1 [Jatropha curcas]
swissprot
ID P38094
description Protein fluG OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=fluG PE=1 SV=1
trembl
ID A0A067K2F5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16587 PE=3 SV=1
Gene Ontology
ID GO:0005829
description protein flug

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21679: 150267-151746 , PASA_asmbl_21680: 154263-155309 , PASA_asmbl_21681: 155966-158684
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002097_050 0.0 - - PREDICTED: protein fluG isoform X1 [Jatropha curcas]
2 Hb_002170_050 0.0720174954 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09060 [Jatropha curcas]
3 Hb_000025_710 0.0722262599 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
4 Hb_027472_220 0.0732970609 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]
5 Hb_188063_010 0.0766224904 - - hypothetical protein RCOM_1469330 [Ricinus communis]
6 Hb_005402_040 0.0771558941 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
7 Hb_011202_020 0.0806397335 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
8 Hb_002333_050 0.0808375399 - - PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]
9 Hb_000176_100 0.0821629768 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
10 Hb_002350_010 0.0822209207 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Jatropha curcas]
11 Hb_159558_010 0.0859946952 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
12 Hb_001959_020 0.0865665071 - - PREDICTED: uncharacterized protein LOC105638454 isoform X1 [Jatropha curcas]
13 Hb_011947_050 0.088125933 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
14 Hb_000740_100 0.0885357766 - - calpain, putative [Ricinus communis]
15 Hb_000949_010 0.0887975861 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
16 Hb_012184_060 0.0893399068 - - PREDICTED: nuclear pore complex protein NUP1 isoform X1 [Jatropha curcas]
17 Hb_001789_040 0.0894550291 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
18 Hb_000412_010 0.0899999478 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_007576_210 0.0900707243 - - PREDICTED: protein furry homolog [Jatropha curcas]
20 Hb_009486_170 0.0905053701 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]

Gene co-expression network

sample Hb_002097_050 Hb_002097_050 Hb_002170_050 Hb_002170_050 Hb_002097_050--Hb_002170_050 Hb_000025_710 Hb_000025_710 Hb_002097_050--Hb_000025_710 Hb_027472_220 Hb_027472_220 Hb_002097_050--Hb_027472_220 Hb_188063_010 Hb_188063_010 Hb_002097_050--Hb_188063_010 Hb_005402_040 Hb_005402_040 Hb_002097_050--Hb_005402_040 Hb_011202_020 Hb_011202_020 Hb_002097_050--Hb_011202_020 Hb_003058_060 Hb_003058_060 Hb_002170_050--Hb_003058_060 Hb_000412_010 Hb_000412_010 Hb_002170_050--Hb_000412_010 Hb_003060_060 Hb_003060_060 Hb_002170_050--Hb_003060_060 Hb_002107_070 Hb_002107_070 Hb_002170_050--Hb_002107_070 Hb_001575_010 Hb_001575_010 Hb_002170_050--Hb_001575_010 Hb_000025_710--Hb_188063_010 Hb_000025_710--Hb_005402_040 Hb_001191_120 Hb_001191_120 Hb_000025_710--Hb_001191_120 Hb_000176_100 Hb_000176_100 Hb_000025_710--Hb_000176_100 Hb_002333_050 Hb_002333_050 Hb_000025_710--Hb_002333_050 Hb_005542_140 Hb_005542_140 Hb_000025_710--Hb_005542_140 Hb_000934_210 Hb_000934_210 Hb_027472_220--Hb_000934_210 Hb_027472_220--Hb_005402_040 Hb_001341_180 Hb_001341_180 Hb_027472_220--Hb_001341_180 Hb_002805_210 Hb_002805_210 Hb_027472_220--Hb_002805_210 Hb_002350_010 Hb_002350_010 Hb_027472_220--Hb_002350_010 Hb_005832_010 Hb_005832_010 Hb_027472_220--Hb_005832_010 Hb_188063_010--Hb_002333_050 Hb_001699_280 Hb_001699_280 Hb_188063_010--Hb_001699_280 Hb_009486_170 Hb_009486_170 Hb_188063_010--Hb_009486_170 Hb_003581_170 Hb_003581_170 Hb_188063_010--Hb_003581_170 Hb_000261_150 Hb_000261_150 Hb_188063_010--Hb_000261_150 Hb_005402_040--Hb_011202_020 Hb_005357_260 Hb_005357_260 Hb_005402_040--Hb_005357_260 Hb_003124_160 Hb_003124_160 Hb_005402_040--Hb_003124_160 Hb_000395_070 Hb_000395_070 Hb_005402_040--Hb_000395_070 Hb_001235_230 Hb_001235_230 Hb_011202_020--Hb_001235_230 Hb_011202_020--Hb_003124_160 Hb_011202_020--Hb_005357_260 Hb_000261_030 Hb_000261_030 Hb_011202_020--Hb_000261_030 Hb_011202_020--Hb_009486_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.25806 5.26722 2.12058 2.5465 4.69895 4.32603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.37738 2.29199 1.62013 4.66147 4.33694

CAGE analysis