Hb_002805_210

Information

Type transcription factor
Description TF Family: SNF2
Location Contig2805: 159510-179971
Sequence    

Annotation

kegg
ID pop:POPTR_0001s26030g
description hypothetical protein
nr
ID KHG14449.1
description Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
swissprot
ID F4IV99
description Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana GN=CHR5 PE=3 SV=1
trembl
ID A0A0B0NRL6
description Chromodomain-helicase-DNA-binding 2 OS=Gossypium arboreum GN=F383_08687 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein chromatin remodeling 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29299: 159656-164168 , PASA_asmbl_29300: 164191-178279 , PASA_asmbl_29302: 178671-179861
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002805_210 0.0 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
2 Hb_011174_020 0.0569229956 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
3 Hb_027472_220 0.0633398177 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]
4 Hb_012244_020 0.0661183804 - - calpain, putative [Ricinus communis]
5 Hb_000934_210 0.0668382226 - - suppressor of ty, putative [Ricinus communis]
6 Hb_001157_160 0.0748830702 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2 isoform X1 [Jatropha curcas]
7 Hb_123531_010 0.0757374899 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
8 Hb_005408_030 0.0760041577 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
9 Hb_005186_040 0.0760766707 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
10 Hb_002357_070 0.0774886624 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
11 Hb_004208_050 0.0796604471 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
12 Hb_000795_040 0.0797408099 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
13 Hb_006531_020 0.0811937594 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
14 Hb_001925_060 0.0812265245 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]
15 Hb_006031_010 0.0813489189 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
16 Hb_016734_060 0.0825985563 - - PREDICTED: nucleolar protein 6 [Jatropha curcas]
17 Hb_002213_020 0.0831315192 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
18 Hb_001341_180 0.083443739 - - PREDICTED: transmembrane protein 209 [Jatropha curcas]
19 Hb_000363_300 0.0848851806 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
20 Hb_001951_170 0.0851888726 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]

Gene co-expression network

sample Hb_002805_210 Hb_002805_210 Hb_011174_020 Hb_011174_020 Hb_002805_210--Hb_011174_020 Hb_027472_220 Hb_027472_220 Hb_002805_210--Hb_027472_220 Hb_012244_020 Hb_012244_020 Hb_002805_210--Hb_012244_020 Hb_000934_210 Hb_000934_210 Hb_002805_210--Hb_000934_210 Hb_001157_160 Hb_001157_160 Hb_002805_210--Hb_001157_160 Hb_123531_010 Hb_123531_010 Hb_002805_210--Hb_123531_010 Hb_011174_020--Hb_012244_020 Hb_003040_050 Hb_003040_050 Hb_011174_020--Hb_003040_050 Hb_000568_050 Hb_000568_050 Hb_011174_020--Hb_000568_050 Hb_001925_060 Hb_001925_060 Hb_011174_020--Hb_001925_060 Hb_017469_110 Hb_017469_110 Hb_011174_020--Hb_017469_110 Hb_027472_220--Hb_000934_210 Hb_005402_040 Hb_005402_040 Hb_027472_220--Hb_005402_040 Hb_001341_180 Hb_001341_180 Hb_027472_220--Hb_001341_180 Hb_002350_010 Hb_002350_010 Hb_027472_220--Hb_002350_010 Hb_005832_010 Hb_005832_010 Hb_027472_220--Hb_005832_010 Hb_005186_040 Hb_005186_040 Hb_012244_020--Hb_005186_040 Hb_000363_300 Hb_000363_300 Hb_012244_020--Hb_000363_300 Hb_001648_020 Hb_001648_020 Hb_012244_020--Hb_001648_020 Hb_000925_090 Hb_000925_090 Hb_012244_020--Hb_000925_090 Hb_012244_020--Hb_000934_210 Hb_000934_210--Hb_123531_010 Hb_002007_110 Hb_002007_110 Hb_000934_210--Hb_002007_110 Hb_002357_070 Hb_002357_070 Hb_000934_210--Hb_002357_070 Hb_000958_050 Hb_000958_050 Hb_000934_210--Hb_000958_050 Hb_000676_330 Hb_000676_330 Hb_001157_160--Hb_000676_330 Hb_002411_110 Hb_002411_110 Hb_001157_160--Hb_002411_110 Hb_001157_160--Hb_001925_060 Hb_005542_140 Hb_005542_140 Hb_001157_160--Hb_005542_140 Hb_183510_020 Hb_183510_020 Hb_001157_160--Hb_183510_020 Hb_123531_010--Hb_002007_110 Hb_007245_020 Hb_007245_020 Hb_123531_010--Hb_007245_020 Hb_000331_580 Hb_000331_580 Hb_123531_010--Hb_000331_580 Hb_123531_010--Hb_002357_070 Hb_000172_340 Hb_000172_340 Hb_123531_010--Hb_000172_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.82411 11.8862 5.68947 6.58804 6.81926 6.09531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.25267 6.19262 4.20927 12.1995 12.4338

CAGE analysis