Hb_005402_040

Information

Type -
Description -
Location Contig5402: 72828-98884
Sequence    

Annotation

kegg
ID pop:POPTR_0001s22140g
description POPTRDRAFT_548716; hypothetical protein
nr
ID XP_012066371.1
description PREDICTED: replication factor C subunit 1 [Jatropha curcas]
swissprot
ID Q9C587
description Replication factor C subunit 1 OS=Arabidopsis thaliana GN=RFC1 PE=2 SV=1
trembl
ID A0A067LEN7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23917 PE=4 SV=1
Gene Ontology
ID GO:0005663
description replication factor c subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47845: 72819-74827 , PASA_asmbl_47846: 74835-98595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005402_040 0.0 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
2 Hb_027472_220 0.0511046361 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]
3 Hb_011202_020 0.0534439587 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
4 Hb_005357_260 0.0582043201 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
5 Hb_003124_160 0.0590417149 - - dynamin, putative [Ricinus communis]
6 Hb_000025_710 0.0601328658 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
7 Hb_000395_070 0.0626589354 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
8 Hb_159558_010 0.0628283636 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
9 Hb_000740_100 0.0640833185 - - calpain, putative [Ricinus communis]
10 Hb_000261_030 0.0649101666 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
11 Hb_000608_230 0.0661016154 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
12 Hb_001789_040 0.0677046925 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
13 Hb_000879_040 0.0678723929 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
14 Hb_000398_080 0.0679172693 - - tip120, putative [Ricinus communis]
15 Hb_001341_180 0.0679856406 - - PREDICTED: transmembrane protein 209 [Jatropha curcas]
16 Hb_005542_140 0.0686742468 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
17 Hb_000003_100 0.0689199971 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
18 Hb_000563_130 0.0697461837 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
19 Hb_001318_070 0.0709918582 transcription factor TF Family: SBP conserved hypothetical protein [Ricinus communis]
20 Hb_140049_080 0.0710243104 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]

Gene co-expression network

sample Hb_005402_040 Hb_005402_040 Hb_027472_220 Hb_027472_220 Hb_005402_040--Hb_027472_220 Hb_011202_020 Hb_011202_020 Hb_005402_040--Hb_011202_020 Hb_005357_260 Hb_005357_260 Hb_005402_040--Hb_005357_260 Hb_003124_160 Hb_003124_160 Hb_005402_040--Hb_003124_160 Hb_000025_710 Hb_000025_710 Hb_005402_040--Hb_000025_710 Hb_000395_070 Hb_000395_070 Hb_005402_040--Hb_000395_070 Hb_000934_210 Hb_000934_210 Hb_027472_220--Hb_000934_210 Hb_001341_180 Hb_001341_180 Hb_027472_220--Hb_001341_180 Hb_002805_210 Hb_002805_210 Hb_027472_220--Hb_002805_210 Hb_002350_010 Hb_002350_010 Hb_027472_220--Hb_002350_010 Hb_005832_010 Hb_005832_010 Hb_027472_220--Hb_005832_010 Hb_001235_230 Hb_001235_230 Hb_011202_020--Hb_001235_230 Hb_011202_020--Hb_003124_160 Hb_011202_020--Hb_005357_260 Hb_000261_030 Hb_000261_030 Hb_011202_020--Hb_000261_030 Hb_009486_170 Hb_009486_170 Hb_011202_020--Hb_009486_170 Hb_011689_030 Hb_011689_030 Hb_005357_260--Hb_011689_030 Hb_000176_100 Hb_000176_100 Hb_005357_260--Hb_000176_100 Hb_000665_230 Hb_000665_230 Hb_005357_260--Hb_000665_230 Hb_005357_260--Hb_003124_160 Hb_000176_130 Hb_000176_130 Hb_003124_160--Hb_000176_130 Hb_004429_010 Hb_004429_010 Hb_003124_160--Hb_004429_010 Hb_002027_280 Hb_002027_280 Hb_003124_160--Hb_002027_280 Hb_003124_160--Hb_000261_030 Hb_188063_010 Hb_188063_010 Hb_000025_710--Hb_188063_010 Hb_001191_120 Hb_001191_120 Hb_000025_710--Hb_001191_120 Hb_000025_710--Hb_000176_100 Hb_002333_050 Hb_002333_050 Hb_000025_710--Hb_002333_050 Hb_005542_140 Hb_005542_140 Hb_000025_710--Hb_005542_140 Hb_012395_140 Hb_012395_140 Hb_000395_070--Hb_012395_140 Hb_000740_100 Hb_000740_100 Hb_000395_070--Hb_000740_100 Hb_003060_060 Hb_003060_060 Hb_000395_070--Hb_003060_060 Hb_000412_010 Hb_000412_010 Hb_000395_070--Hb_000412_010 Hb_002815_030 Hb_002815_030 Hb_000395_070--Hb_002815_030 Hb_000579_230 Hb_000579_230 Hb_000395_070--Hb_000579_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.9935 20.1804 13.1771 12.7093 17.2442 17.0718
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.83149 7.18498 9.26287 20.6336 18.5471

CAGE analysis