Hb_188063_010

Information

Type -
Description -
Location Contig188063: 2872-11017
Sequence    

Annotation

kegg
ID rcu:RCOM_1469330
description hypothetical protein
nr
ID XP_002514638.1
description hypothetical protein RCOM_1469330 [Ricinus communis]
swissprot
ID Q6YYC0
description Zinc finger CCCH domain-containing protein 55 OS=Oryza sativa subsp. japonica GN=Os08g0135800 PE=2 SV=1
trembl
ID B9RLL9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1469330 PE=4 SV=1
Gene Ontology
ID GO:0005488
description serine arginine repetitive matrix protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18552: 4384-4677 , PASA_asmbl_18553: 5790-6851 , PASA_asmbl_18554: 6930-7700 , PASA_asmbl_18555: 8190-8682 , PASA_asmbl_18556: 9442-10986
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_188063_010 0.0 - - hypothetical protein RCOM_1469330 [Ricinus communis]
2 Hb_002333_050 0.0368759649 - - PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]
3 Hb_000025_710 0.0486479356 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
4 Hb_001699_280 0.0502744803 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]
5 Hb_009486_170 0.0601351103 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
6 Hb_003581_170 0.0615597217 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
7 Hb_000261_150 0.062409523 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002909_120 0.0661403463 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
9 Hb_000679_330 0.0702261049 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
10 Hb_000836_020 0.0741220684 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
11 Hb_002097_050 0.0766224904 - - PREDICTED: protein fluG isoform X1 [Jatropha curcas]
12 Hb_000069_410 0.0766625369 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
13 Hb_000665_230 0.0770827536 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
14 Hb_000105_040 0.0772728487 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
15 Hb_001959_020 0.0777366729 - - PREDICTED: uncharacterized protein LOC105638454 isoform X1 [Jatropha curcas]
16 Hb_001188_020 0.077760684 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X1 [Jatropha curcas]
17 Hb_007576_210 0.0781076208 - - PREDICTED: protein furry homolog [Jatropha curcas]
18 Hb_001133_030 0.0781352399 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
19 Hb_011947_050 0.0784445594 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
20 Hb_000176_100 0.0787290978 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]

Gene co-expression network

sample Hb_188063_010 Hb_188063_010 Hb_002333_050 Hb_002333_050 Hb_188063_010--Hb_002333_050 Hb_000025_710 Hb_000025_710 Hb_188063_010--Hb_000025_710 Hb_001699_280 Hb_001699_280 Hb_188063_010--Hb_001699_280 Hb_009486_170 Hb_009486_170 Hb_188063_010--Hb_009486_170 Hb_003581_170 Hb_003581_170 Hb_188063_010--Hb_003581_170 Hb_000261_150 Hb_000261_150 Hb_188063_010--Hb_000261_150 Hb_002333_050--Hb_009486_170 Hb_002909_120 Hb_002909_120 Hb_002333_050--Hb_002909_120 Hb_002333_050--Hb_000025_710 Hb_002333_050--Hb_001699_280 Hb_000665_230 Hb_000665_230 Hb_002333_050--Hb_000665_230 Hb_005402_040 Hb_005402_040 Hb_000025_710--Hb_005402_040 Hb_001191_120 Hb_001191_120 Hb_000025_710--Hb_001191_120 Hb_000176_100 Hb_000176_100 Hb_000025_710--Hb_000176_100 Hb_005542_140 Hb_005542_140 Hb_000025_710--Hb_005542_140 Hb_000105_040 Hb_000105_040 Hb_001699_280--Hb_000105_040 Hb_001699_280--Hb_003581_170 Hb_001699_280--Hb_000261_150 Hb_001662_180 Hb_001662_180 Hb_001699_280--Hb_001662_180 Hb_001951_170 Hb_001951_170 Hb_001699_280--Hb_001951_170 Hb_001133_030 Hb_001133_030 Hb_009486_170--Hb_001133_030 Hb_003805_040 Hb_003805_040 Hb_009486_170--Hb_003805_040 Hb_009486_170--Hb_000665_230 Hb_007576_210 Hb_007576_210 Hb_009486_170--Hb_007576_210 Hb_000086_690 Hb_000086_690 Hb_009486_170--Hb_000086_690 Hb_003581_170--Hb_000105_040 Hb_003581_170--Hb_000176_100 Hb_000949_010 Hb_000949_010 Hb_003581_170--Hb_000949_010 Hb_011242_060 Hb_011242_060 Hb_003581_170--Hb_011242_060 Hb_000836_020 Hb_000836_020 Hb_003581_170--Hb_000836_020 Hb_000083_070 Hb_000083_070 Hb_000261_150--Hb_000083_070 Hb_005186_040 Hb_005186_040 Hb_000261_150--Hb_005186_040 Hb_000261_150--Hb_000025_710 Hb_002095_070 Hb_002095_070 Hb_000261_150--Hb_002095_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.33489 12.4436 3.39203 5.40711 7.32364 7.95761
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.10778 3.34285 3.53297 9.1848 9.83185

CAGE analysis