Hb_011242_060

Information

Type transcription factor
Description TF Family: SNF2
Location Contig11242: 56920-70595
Sequence    

Annotation

kegg
ID rcu:RCOM_1615880
description Chromo domain protein, putative (EC:2.7.11.1)
nr
ID XP_002511882.1
description Chromo domain protein, putative [Ricinus communis]
swissprot
ID Q6EVK6
description ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM PE=1 SV=1
trembl
ID B9RDU3
description Chromo domain protein, putative OS=Ricinus communis GN=RCOM_1615880 PE=4 SV=1
Gene Ontology
ID GO:0005634
description atp-dependent helicase brm

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03833: 56618-70223 , PASA_asmbl_03834: 70293-70472
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011242_060 0.0 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
2 Hb_000069_470 0.0458698467 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
3 Hb_003581_170 0.0600412252 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
4 Hb_000265_090 0.064080928 - - PREDICTED: flowering time control protein FPA [Jatropha curcas]
5 Hb_003729_030 0.0651578704 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
6 Hb_000836_020 0.0674429816 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
7 Hb_000321_150 0.0692893227 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
8 Hb_004483_040 0.0693981298 - - hypothetical protein JCGZ_22047 [Jatropha curcas]
9 Hb_005188_040 0.0695969936 - - PREDICTED: protein furry homolog-like [Nicotiana sylvestris]
10 Hb_003805_040 0.0701061234 - - Sacsin [Glycine soja]
11 Hb_031042_050 0.0718280539 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
12 Hb_000665_230 0.0727072484 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
13 Hb_000487_380 0.0731589 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
14 Hb_006117_080 0.07530144 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
15 Hb_000025_280 0.0772155901 transcription factor TF Family: C3H hypothetical protein JCGZ_07432 [Jatropha curcas]
16 Hb_000176_100 0.0772395041 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
17 Hb_000703_130 0.0774379587 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
18 Hb_001545_150 0.0795372614 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
19 Hb_002960_080 0.0796354288 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105635322 [Jatropha curcas]
20 Hb_000661_130 0.0797589952 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]

Gene co-expression network

sample Hb_011242_060 Hb_011242_060 Hb_000069_470 Hb_000069_470 Hb_011242_060--Hb_000069_470 Hb_003581_170 Hb_003581_170 Hb_011242_060--Hb_003581_170 Hb_000265_090 Hb_000265_090 Hb_011242_060--Hb_000265_090 Hb_003729_030 Hb_003729_030 Hb_011242_060--Hb_003729_030 Hb_000836_020 Hb_000836_020 Hb_011242_060--Hb_000836_020 Hb_000321_150 Hb_000321_150 Hb_011242_060--Hb_000321_150 Hb_031042_050 Hb_031042_050 Hb_000069_470--Hb_031042_050 Hb_006117_080 Hb_006117_080 Hb_000069_470--Hb_006117_080 Hb_000025_280 Hb_000025_280 Hb_000069_470--Hb_000025_280 Hb_001104_190 Hb_001104_190 Hb_000069_470--Hb_001104_190 Hb_004483_040 Hb_004483_040 Hb_000069_470--Hb_004483_040 Hb_000105_040 Hb_000105_040 Hb_003581_170--Hb_000105_040 Hb_000176_100 Hb_000176_100 Hb_003581_170--Hb_000176_100 Hb_000949_010 Hb_000949_010 Hb_003581_170--Hb_000949_010 Hb_001699_280 Hb_001699_280 Hb_003581_170--Hb_001699_280 Hb_003581_170--Hb_000836_020 Hb_000703_130 Hb_000703_130 Hb_000265_090--Hb_000703_130 Hb_000665_230 Hb_000665_230 Hb_000265_090--Hb_000665_230 Hb_005188_040 Hb_005188_040 Hb_000265_090--Hb_005188_040 Hb_010712_040 Hb_010712_040 Hb_000265_090--Hb_010712_040 Hb_000265_090--Hb_000836_020 Hb_003729_030--Hb_000321_150 Hb_003729_030--Hb_000069_470 Hb_002253_080 Hb_002253_080 Hb_003729_030--Hb_002253_080 Hb_000120_660 Hb_000120_660 Hb_003729_030--Hb_000120_660 Hb_000260_070 Hb_000260_070 Hb_003729_030--Hb_000260_070 Hb_000836_020--Hb_001699_280 Hb_000836_020--Hb_000703_130 Hb_188063_010 Hb_188063_010 Hb_000836_020--Hb_188063_010 Hb_000321_150--Hb_006117_080 Hb_000321_150--Hb_000069_470 Hb_000661_130 Hb_000661_130 Hb_000321_150--Hb_000661_130 Hb_009767_080 Hb_009767_080 Hb_000321_150--Hb_009767_080 Hb_000977_120 Hb_000977_120 Hb_000321_150--Hb_000977_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5418 26.5366 7.62367 12.1799 10.6154 14.568
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.03269 6.45525 8.47214 11.4767 13.7834

CAGE analysis