Hb_010712_040

Information

Type -
Description -
Location Contig10712: 17712-20156
Sequence    

Annotation

kegg
ID pop:POPTR_0003s19010g
description POPTRDRAFT_758210; hypothetical protein
nr
ID XP_012068740.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g11290 [Jatropha curcas]
swissprot
ID Q3E6Q1
description Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
trembl
ID A0A067L904
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24583 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at1g11290

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02271: 18291-18408 , PASA_asmbl_02273: 18948-19278 , PASA_asmbl_02274: 19716-20054 , PASA_asmbl_02275: 20234-20467
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010712_040 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290 [Jatropha curcas]
2 Hb_000661_130 0.0715540174 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
3 Hb_000265_090 0.0722669536 - - PREDICTED: flowering time control protein FPA [Jatropha curcas]
4 Hb_011242_060 0.0816045117 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
5 Hb_006117_080 0.085608094 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
6 Hb_000703_130 0.0876098362 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
7 Hb_000836_020 0.0885031149 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
8 Hb_003106_030 0.0924128311 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
9 Hb_000069_470 0.0932901795 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
10 Hb_005188_040 0.0950989991 - - PREDICTED: protein furry homolog-like [Nicotiana sylvestris]
11 Hb_004483_040 0.0955523774 - - hypothetical protein JCGZ_22047 [Jatropha curcas]
12 Hb_005539_090 0.0971079698 transcription factor TF Family: PHD PREDICTED: methyl-CpG-binding domain-containing protein 9 isoform X1 [Jatropha curcas]
13 Hb_024185_010 0.0986198023 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
14 Hb_014834_060 0.1001699089 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
15 Hb_000083_070 0.1004789904 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
16 Hb_002400_140 0.1017696779 - - protein kinase, putative [Ricinus communis]
17 Hb_000321_150 0.102059166 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
18 Hb_000261_150 0.1024262561 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007575_080 0.1033107023 - - PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
20 Hb_000025_710 0.1036739327 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]

Gene co-expression network

sample Hb_010712_040 Hb_010712_040 Hb_000661_130 Hb_000661_130 Hb_010712_040--Hb_000661_130 Hb_000265_090 Hb_000265_090 Hb_010712_040--Hb_000265_090 Hb_011242_060 Hb_011242_060 Hb_010712_040--Hb_011242_060 Hb_006117_080 Hb_006117_080 Hb_010712_040--Hb_006117_080 Hb_000703_130 Hb_000703_130 Hb_010712_040--Hb_000703_130 Hb_000836_020 Hb_000836_020 Hb_010712_040--Hb_000836_020 Hb_019430_020 Hb_019430_020 Hb_000661_130--Hb_019430_020 Hb_000321_150 Hb_000321_150 Hb_000661_130--Hb_000321_150 Hb_000661_130--Hb_006117_080 Hb_000069_470 Hb_000069_470 Hb_000661_130--Hb_000069_470 Hb_004483_040 Hb_004483_040 Hb_000661_130--Hb_004483_040 Hb_000265_090--Hb_000703_130 Hb_000265_090--Hb_011242_060 Hb_000665_230 Hb_000665_230 Hb_000265_090--Hb_000665_230 Hb_005188_040 Hb_005188_040 Hb_000265_090--Hb_005188_040 Hb_000265_090--Hb_000836_020 Hb_011242_060--Hb_000069_470 Hb_003581_170 Hb_003581_170 Hb_011242_060--Hb_003581_170 Hb_003729_030 Hb_003729_030 Hb_011242_060--Hb_003729_030 Hb_011242_060--Hb_000836_020 Hb_011242_060--Hb_000321_150 Hb_001104_190 Hb_001104_190 Hb_006117_080--Hb_001104_190 Hb_006117_080--Hb_000069_470 Hb_009150_020 Hb_009150_020 Hb_006117_080--Hb_009150_020 Hb_006117_080--Hb_000321_150 Hb_024185_010 Hb_024185_010 Hb_006117_080--Hb_024185_010 Hb_000260_640 Hb_000260_640 Hb_006117_080--Hb_000260_640 Hb_000176_100 Hb_000176_100 Hb_000703_130--Hb_000176_100 Hb_007818_030 Hb_007818_030 Hb_000703_130--Hb_007818_030 Hb_009476_090 Hb_009476_090 Hb_000703_130--Hb_009476_090 Hb_000579_010 Hb_000579_010 Hb_000703_130--Hb_000579_010 Hb_002687_090 Hb_002687_090 Hb_000703_130--Hb_002687_090 Hb_000836_020--Hb_003581_170 Hb_001699_280 Hb_001699_280 Hb_000836_020--Hb_001699_280 Hb_000836_020--Hb_000703_130 Hb_188063_010 Hb_188063_010 Hb_000836_020--Hb_188063_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.25602 5.05047 1.43791 1.58589 1.7971 2.80565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.32135 1.11096 1.13988 1.58959 3.47989

CAGE analysis