Hb_024185_010

Information

Type transcription factor
Description TF Family: PHD
Location Contig24185: 11769-24069
Sequence    

Annotation

kegg
ID rcu:RCOM_1573230
description transcription cofactor, putative
nr
ID XP_012087277.1
description PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
swissprot
ID Q9FWQ5
description Histone acetyltransferase HAC12 OS=Arabidopsis thaliana GN=HAC12 PE=2 SV=2
trembl
ID B9RHR9
description Transcription cofactor, putative OS=Ricinus communis GN=RCOM_1573230 PE=4 SV=1
Gene Ontology
ID GO:0003712
description histone acetyltransferase hac1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25316: 11869-16041 , PASA_asmbl_25318: 16042-24035
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024185_010 0.0 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
2 Hb_007575_080 0.0614541461 - - PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
3 Hb_000720_150 0.0614876046 - - PREDICTED: uncharacterized protein LOC105645849 isoform X3 [Jatropha curcas]
4 Hb_006117_080 0.0646951367 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
5 Hb_008053_040 0.0682478766 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Pyrus x bretschneideri]
6 Hb_000661_130 0.0725996782 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
7 Hb_000703_130 0.0731060446 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
8 Hb_000321_150 0.0751339195 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
9 Hb_009150_020 0.0794594287 - - PREDICTED: uncharacterized protein LOC105630583 [Jatropha curcas]
10 Hb_000261_150 0.0794880738 - - conserved hypothetical protein [Ricinus communis]
11 Hb_014834_060 0.0800780711 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
12 Hb_000176_100 0.0836702586 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
13 Hb_003805_050 0.0854931819 - - -
14 Hb_000665_230 0.0855268824 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
15 Hb_000579_010 0.0859819814 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
16 Hb_000083_070 0.087064486 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
17 Hb_000069_470 0.0871694921 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
18 Hb_005188_040 0.0876723676 - - PREDICTED: protein furry homolog-like [Nicotiana sylvestris]
19 Hb_002095_070 0.0888682677 - - PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Jatropha curcas]
20 Hb_000265_090 0.0895918474 - - PREDICTED: flowering time control protein FPA [Jatropha curcas]

Gene co-expression network

sample Hb_024185_010 Hb_024185_010 Hb_007575_080 Hb_007575_080 Hb_024185_010--Hb_007575_080 Hb_000720_150 Hb_000720_150 Hb_024185_010--Hb_000720_150 Hb_006117_080 Hb_006117_080 Hb_024185_010--Hb_006117_080 Hb_008053_040 Hb_008053_040 Hb_024185_010--Hb_008053_040 Hb_000661_130 Hb_000661_130 Hb_024185_010--Hb_000661_130 Hb_000703_130 Hb_000703_130 Hb_024185_010--Hb_000703_130 Hb_007575_080--Hb_008053_040 Hb_007575_080--Hb_006117_080 Hb_000321_150 Hb_000321_150 Hb_007575_080--Hb_000321_150 Hb_007575_080--Hb_000661_130 Hb_002780_010 Hb_002780_010 Hb_007575_080--Hb_002780_010 Hb_000809_170 Hb_000809_170 Hb_000720_150--Hb_000809_170 Hb_000703_200 Hb_000703_200 Hb_000720_150--Hb_000703_200 Hb_005188_040 Hb_005188_040 Hb_000720_150--Hb_005188_040 Hb_000176_100 Hb_000176_100 Hb_000720_150--Hb_000176_100 Hb_001545_150 Hb_001545_150 Hb_000720_150--Hb_001545_150 Hb_001104_190 Hb_001104_190 Hb_006117_080--Hb_001104_190 Hb_000069_470 Hb_000069_470 Hb_006117_080--Hb_000069_470 Hb_009150_020 Hb_009150_020 Hb_006117_080--Hb_009150_020 Hb_006117_080--Hb_000321_150 Hb_000260_640 Hb_000260_640 Hb_006117_080--Hb_000260_640 Hb_003805_040 Hb_003805_040 Hb_008053_040--Hb_003805_040 Hb_005186_040 Hb_005186_040 Hb_008053_040--Hb_005186_040 Hb_002521_020 Hb_002521_020 Hb_008053_040--Hb_002521_020 Hb_000665_230 Hb_000665_230 Hb_008053_040--Hb_000665_230 Hb_019430_020 Hb_019430_020 Hb_000661_130--Hb_019430_020 Hb_000661_130--Hb_000321_150 Hb_000661_130--Hb_006117_080 Hb_000661_130--Hb_000069_470 Hb_010712_040 Hb_010712_040 Hb_000661_130--Hb_010712_040 Hb_004483_040 Hb_004483_040 Hb_000661_130--Hb_004483_040 Hb_000265_090 Hb_000265_090 Hb_000703_130--Hb_000265_090 Hb_000703_130--Hb_000176_100 Hb_007818_030 Hb_007818_030 Hb_000703_130--Hb_007818_030 Hb_009476_090 Hb_009476_090 Hb_000703_130--Hb_009476_090 Hb_000579_010 Hb_000579_010 Hb_000703_130--Hb_000579_010 Hb_002687_090 Hb_002687_090 Hb_000703_130--Hb_002687_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.73038 26.7049 7.73649 6.64082 11.654 9.72723
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.2201 5.92347 9.02312 9.92248 16.1429

CAGE analysis