Hb_000720_150

Information

Type -
Description -
Location Contig720: 181525-186712
Sequence    

Annotation

kegg
ID rcu:RCOM_1685990
description hypothetical protein
nr
ID XP_012086960.1
description PREDICTED: uncharacterized protein LOC105645849 isoform X3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K0Z5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20630 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55637: 160844-181922 , PASA_asmbl_55639: 182778-183145 , PASA_asmbl_55643: 185372-186684
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000720_150 0.0 - - PREDICTED: uncharacterized protein LOC105645849 isoform X3 [Jatropha curcas]
2 Hb_024185_010 0.0614876046 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
3 Hb_000809_170 0.0770741515 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog isoform X1 [Jatropha curcas]
4 Hb_000703_200 0.0785428724 - - PREDICTED: ATP-dependent RNA helicase DHX36-like isoform X1 [Jatropha curcas]
5 Hb_005188_040 0.0795891253 - - PREDICTED: protein furry homolog-like [Nicotiana sylvestris]
6 Hb_000176_100 0.0825002841 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
7 Hb_001545_150 0.0836502998 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
8 Hb_006117_080 0.0844139095 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
9 Hb_007054_040 0.0849505504 - - PREDICTED: protein RST1 [Jatropha curcas]
10 Hb_000024_040 0.0849775691 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
11 Hb_008053_040 0.0866605115 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Pyrus x bretschneideri]
12 Hb_007426_060 0.0874049425 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
13 Hb_012368_100 0.0876128353 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
14 Hb_004785_030 0.088147727 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
15 Hb_009302_030 0.0890161749 - - hypothetical protein RCOM_1176340 [Ricinus communis]
16 Hb_000069_470 0.0897155257 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
17 Hb_000703_130 0.0905831208 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
18 Hb_001628_070 0.0908599113 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_009150_020 0.0912809258 - - PREDICTED: uncharacterized protein LOC105630583 [Jatropha curcas]
20 Hb_007818_030 0.0922869215 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]

Gene co-expression network

sample Hb_000720_150 Hb_000720_150 Hb_024185_010 Hb_024185_010 Hb_000720_150--Hb_024185_010 Hb_000809_170 Hb_000809_170 Hb_000720_150--Hb_000809_170 Hb_000703_200 Hb_000703_200 Hb_000720_150--Hb_000703_200 Hb_005188_040 Hb_005188_040 Hb_000720_150--Hb_005188_040 Hb_000176_100 Hb_000176_100 Hb_000720_150--Hb_000176_100 Hb_001545_150 Hb_001545_150 Hb_000720_150--Hb_001545_150 Hb_007575_080 Hb_007575_080 Hb_024185_010--Hb_007575_080 Hb_006117_080 Hb_006117_080 Hb_024185_010--Hb_006117_080 Hb_008053_040 Hb_008053_040 Hb_024185_010--Hb_008053_040 Hb_000661_130 Hb_000661_130 Hb_024185_010--Hb_000661_130 Hb_000703_130 Hb_000703_130 Hb_024185_010--Hb_000703_130 Hb_000809_170--Hb_001545_150 Hb_000402_230 Hb_000402_230 Hb_000809_170--Hb_000402_230 Hb_004553_030 Hb_004553_030 Hb_000809_170--Hb_004553_030 Hb_002768_050 Hb_002768_050 Hb_000809_170--Hb_002768_050 Hb_000949_020 Hb_000949_020 Hb_000809_170--Hb_000949_020 Hb_009302_030 Hb_009302_030 Hb_000703_200--Hb_009302_030 Hb_000024_040 Hb_000024_040 Hb_000703_200--Hb_000024_040 Hb_007426_060 Hb_007426_060 Hb_000703_200--Hb_007426_060 Hb_000703_200--Hb_001545_150 Hb_001723_010 Hb_001723_010 Hb_000703_200--Hb_001723_010 Hb_004517_020 Hb_004517_020 Hb_000703_200--Hb_004517_020 Hb_002542_130 Hb_002542_130 Hb_005188_040--Hb_002542_130 Hb_004785_030 Hb_004785_030 Hb_005188_040--Hb_004785_030 Hb_005188_040--Hb_001545_150 Hb_011242_060 Hb_011242_060 Hb_005188_040--Hb_011242_060 Hb_000265_090 Hb_000265_090 Hb_005188_040--Hb_000265_090 Hb_009028_010 Hb_009028_010 Hb_005188_040--Hb_009028_010 Hb_000949_010 Hb_000949_010 Hb_000176_100--Hb_000949_010 Hb_001959_020 Hb_001959_020 Hb_000176_100--Hb_001959_020 Hb_003581_170 Hb_003581_170 Hb_000176_100--Hb_003581_170 Hb_005357_260 Hb_005357_260 Hb_000176_100--Hb_005357_260 Hb_000176_100--Hb_000703_130 Hb_011689_030 Hb_011689_030 Hb_000176_100--Hb_011689_030 Hb_000479_070 Hb_000479_070 Hb_001545_150--Hb_000479_070 Hb_001089_050 Hb_001089_050 Hb_001545_150--Hb_001089_050 Hb_031042_050 Hb_031042_050 Hb_001545_150--Hb_031042_050 Hb_001545_150--Hb_000402_230 Hb_003918_030 Hb_003918_030 Hb_001545_150--Hb_003918_030 Hb_001279_120 Hb_001279_120 Hb_001545_150--Hb_001279_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.43906 13.7507 4.52832 4.47716 6.22094 3.96079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.91553 3.71991 4.56104 6.03338 6.87035

CAGE analysis