Hb_004785_030

Information

Type transcription factor
Description TF Family: bZIP
Location Contig4785: 39884-51354
Sequence    

Annotation

kegg
ID pop:POPTR_0002s07020g
description POPTRDRAFT_411874; hypothetical protein
nr
ID XP_012066035.1
description PREDICTED: transcription factor VIP1 [Jatropha curcas]
swissprot
ID Q9MA75
description Transcription factor VIP1 OS=Arabidopsis thaliana GN=VIP1 PE=1 SV=1
trembl
ID A0A067L3F8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25192 PE=4 SV=1
Gene Ontology
ID GO:0003700
description transcription factor vip1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44548: 40012-51140
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004785_030 0.0 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
2 Hb_002119_090 0.0514058851 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
3 Hb_000700_060 0.0621816656 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
4 Hb_005188_040 0.0676356275 - - PREDICTED: protein furry homolog-like [Nicotiana sylvestris]
5 Hb_044653_020 0.0676904042 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
6 Hb_003604_050 0.0677034056 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
7 Hb_020805_150 0.0750109918 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_012368_100 0.0761126866 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
9 Hb_001545_150 0.0763795334 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
10 Hb_000479_240 0.0765773958 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
11 Hb_000352_070 0.0779901257 - - Potassium transporter, putative [Ricinus communis]
12 Hb_000059_020 0.0788959667 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
13 Hb_002928_190 0.0801910459 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]
14 Hb_000703_200 0.0813122819 - - PREDICTED: ATP-dependent RNA helicase DHX36-like isoform X1 [Jatropha curcas]
15 Hb_005568_040 0.0813909196 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
16 Hb_007054_040 0.0815126431 - - PREDICTED: protein RST1 [Jatropha curcas]
17 Hb_002027_280 0.0816632547 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]
18 Hb_003581_170 0.0820324059 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
19 Hb_000069_130 0.0820754417 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
20 Hb_010712_090 0.0822861703 - - PREDICTED: uncharacterized protein LOC105631276 [Jatropha curcas]

Gene co-expression network

sample Hb_004785_030 Hb_004785_030 Hb_002119_090 Hb_002119_090 Hb_004785_030--Hb_002119_090 Hb_000700_060 Hb_000700_060 Hb_004785_030--Hb_000700_060 Hb_005188_040 Hb_005188_040 Hb_004785_030--Hb_005188_040 Hb_044653_020 Hb_044653_020 Hb_004785_030--Hb_044653_020 Hb_003604_050 Hb_003604_050 Hb_004785_030--Hb_003604_050 Hb_020805_150 Hb_020805_150 Hb_004785_030--Hb_020805_150 Hb_002119_090--Hb_000700_060 Hb_000069_130 Hb_000069_130 Hb_002119_090--Hb_000069_130 Hb_006738_050 Hb_006738_050 Hb_002119_090--Hb_006738_050 Hb_001257_100 Hb_001257_100 Hb_002119_090--Hb_001257_100 Hb_002284_170 Hb_002284_170 Hb_002119_090--Hb_002284_170 Hb_000700_060--Hb_006738_050 Hb_000700_060--Hb_002284_170 Hb_004410_070 Hb_004410_070 Hb_000700_060--Hb_004410_070 Hb_000059_020 Hb_000059_020 Hb_000700_060--Hb_000059_020 Hb_002542_130 Hb_002542_130 Hb_005188_040--Hb_002542_130 Hb_001545_150 Hb_001545_150 Hb_005188_040--Hb_001545_150 Hb_011242_060 Hb_011242_060 Hb_005188_040--Hb_011242_060 Hb_000265_090 Hb_000265_090 Hb_005188_040--Hb_000265_090 Hb_009028_010 Hb_009028_010 Hb_005188_040--Hb_009028_010 Hb_012368_100 Hb_012368_100 Hb_044653_020--Hb_012368_100 Hb_000896_060 Hb_000896_060 Hb_044653_020--Hb_000896_060 Hb_000117_070 Hb_000117_070 Hb_044653_020--Hb_000117_070 Hb_044653_020--Hb_005188_040 Hb_002387_070 Hb_002387_070 Hb_044653_020--Hb_002387_070 Hb_001904_030 Hb_001904_030 Hb_003604_050--Hb_001904_030 Hb_001341_160 Hb_001341_160 Hb_003604_050--Hb_001341_160 Hb_000479_240 Hb_000479_240 Hb_003604_050--Hb_000479_240 Hb_005832_010 Hb_005832_010 Hb_003604_050--Hb_005832_010 Hb_002928_190 Hb_002928_190 Hb_003604_050--Hb_002928_190 Hb_022425_060 Hb_022425_060 Hb_020805_150--Hb_022425_060 Hb_020805_150--Hb_002928_190 Hb_170077_010 Hb_170077_010 Hb_020805_150--Hb_170077_010 Hb_003918_030 Hb_003918_030 Hb_020805_150--Hb_003918_030 Hb_012490_010 Hb_012490_010 Hb_020805_150--Hb_012490_010 Hb_005649_080 Hb_005649_080 Hb_020805_150--Hb_005649_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1912 39.137 13.4586 18.2115 15.4806 13.3118
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.23478 6.63519 9.97791 15.2414 13.8802

CAGE analysis