Hb_002387_070

Information

Type -
Description -
Location Contig2387: 77487-79332
Sequence    

Annotation

kegg
ID rcu:RCOM_0559790
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012066118.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial [Jatropha curcas]
swissprot
ID O49287
description Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E5 PE=3 SV=1
trembl
ID A0A067L3P3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25272 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25010: 79049-79218
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002387_070 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial [Jatropha curcas]
2 Hb_012368_100 0.0747590493 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
3 Hb_044653_020 0.077493663 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
4 Hb_000460_060 0.0840891696 - - importin beta-1, putative [Ricinus communis]
5 Hb_000896_060 0.0928574602 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_000117_070 0.0958580467 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
7 Hb_000526_060 0.1005227321 - - PREDICTED: clustered mitochondria protein [Jatropha curcas]
8 Hb_004785_030 0.1024243332 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
9 Hb_000720_150 0.1084059852 - - PREDICTED: uncharacterized protein LOC105645849 isoform X3 [Jatropha curcas]
10 Hb_000123_350 0.1098291731 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
11 Hb_014834_060 0.1101788655 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
12 Hb_012038_010 0.1113987241 - - phospholipid-transporting atpase, putative [Ricinus communis]
13 Hb_004032_040 0.113046434 - - unknown [Medicago truncatula]
14 Hb_005765_040 0.1140661313 - - transcription elongation factor s-II, putative [Ricinus communis]
15 Hb_120470_010 0.1162653998 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
16 Hb_004800_240 0.120192954 - - PREDICTED: vam6/Vps39-like protein [Jatropha curcas]
17 Hb_001410_130 0.1223831889 - - hypothetical protein POPTR_0001s10880g [Populus trichocarpa]
18 Hb_002119_090 0.1224402714 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
19 Hb_012082_010 0.1228599716 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
20 Hb_178051_070 0.1236853085 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]

Gene co-expression network

sample Hb_002387_070 Hb_002387_070 Hb_012368_100 Hb_012368_100 Hb_002387_070--Hb_012368_100 Hb_044653_020 Hb_044653_020 Hb_002387_070--Hb_044653_020 Hb_000460_060 Hb_000460_060 Hb_002387_070--Hb_000460_060 Hb_000896_060 Hb_000896_060 Hb_002387_070--Hb_000896_060 Hb_000117_070 Hb_000117_070 Hb_002387_070--Hb_000117_070 Hb_000526_060 Hb_000526_060 Hb_002387_070--Hb_000526_060 Hb_012368_100--Hb_044653_020 Hb_012368_100--Hb_000117_070 Hb_012368_100--Hb_000896_060 Hb_004785_030 Hb_004785_030 Hb_012368_100--Hb_004785_030 Hb_000703_130 Hb_000703_130 Hb_012368_100--Hb_000703_130 Hb_044653_020--Hb_000896_060 Hb_044653_020--Hb_004785_030 Hb_044653_020--Hb_000117_070 Hb_005188_040 Hb_005188_040 Hb_044653_020--Hb_005188_040 Hb_003605_220 Hb_003605_220 Hb_000460_060--Hb_003605_220 Hb_000460_060--Hb_044653_020 Hb_001410_130 Hb_001410_130 Hb_000460_060--Hb_001410_130 Hb_000941_080 Hb_000941_080 Hb_000460_060--Hb_000941_080 Hb_006054_030 Hb_006054_030 Hb_000460_060--Hb_006054_030 Hb_000896_060--Hb_000526_060 Hb_014834_060 Hb_014834_060 Hb_000896_060--Hb_014834_060 Hb_000896_060--Hb_000117_070 Hb_000123_350 Hb_000123_350 Hb_000896_060--Hb_000123_350 Hb_000117_070--Hb_000526_060 Hb_120470_010 Hb_120470_010 Hb_000117_070--Hb_120470_010 Hb_000117_070--Hb_000703_130 Hb_007818_030 Hb_007818_030 Hb_000526_060--Hb_007818_030 Hb_000526_060--Hb_120470_010 Hb_155159_010 Hb_155159_010 Hb_000526_060--Hb_155159_010 Hb_000526_060--Hb_000703_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.244878 1.53958 0.370114 0.440484 0.633605 0.312271
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.157615 0.144678 0.351342 0.502295 0.478392

CAGE analysis