Hb_003605_220

Information

Type -
Description -
Location Contig3605: 204960-207473
Sequence    

Annotation

kegg
ID cic:CICLE_v10003606mg
description hypothetical protein
nr
ID XP_012080809.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
swissprot
ID Q9XID3
description G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 OS=Arabidopsis thaliana GN=At1g34300 PE=2 SV=1
trembl
ID A0A067K362
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_16686 PE=3 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase at1g34300

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37154: 204960-207631
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003605_220 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
2 Hb_000460_060 0.0808366894 - - importin beta-1, putative [Ricinus communis]
3 Hb_004994_300 0.0834112863 - - synaptotagmin, putative [Ricinus communis]
4 Hb_008686_020 0.0856993948 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
5 Hb_004696_070 0.0880819533 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
6 Hb_012490_010 0.0916371452 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
7 Hb_001951_100 0.0945265173 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
8 Hb_000941_080 0.0972591776 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X3 [Populus euphratica]
9 Hb_001561_010 0.0993835331 - - PREDICTED: uncharacterized protein LOC105635045 isoform X1 [Jatropha curcas]
10 Hb_001410_130 0.1002682758 - - hypothetical protein POPTR_0001s10880g [Populus trichocarpa]
11 Hb_020805_150 0.1042338541 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_007313_070 0.1054324582 - - PREDICTED: gibberellin receptor GID1C [Jatropha curcas]
13 Hb_143766_030 0.1055809466 - - protein with unknown function [Ricinus communis]
14 Hb_002248_120 0.1074201044 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
15 Hb_006054_030 0.1086784435 - - PREDICTED: protein GPR107-like [Jatropha curcas]
16 Hb_002918_320 0.109468846 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X1 [Jatropha curcas]
17 Hb_002928_190 0.1097832425 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]
18 Hb_044653_020 0.1101508107 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
19 Hb_001911_010 0.111816343 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
20 Hb_000270_230 0.1125773445 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]

Gene co-expression network

sample Hb_003605_220 Hb_003605_220 Hb_000460_060 Hb_000460_060 Hb_003605_220--Hb_000460_060 Hb_004994_300 Hb_004994_300 Hb_003605_220--Hb_004994_300 Hb_008686_020 Hb_008686_020 Hb_003605_220--Hb_008686_020 Hb_004696_070 Hb_004696_070 Hb_003605_220--Hb_004696_070 Hb_012490_010 Hb_012490_010 Hb_003605_220--Hb_012490_010 Hb_001951_100 Hb_001951_100 Hb_003605_220--Hb_001951_100 Hb_002387_070 Hb_002387_070 Hb_000460_060--Hb_002387_070 Hb_044653_020 Hb_044653_020 Hb_000460_060--Hb_044653_020 Hb_001410_130 Hb_001410_130 Hb_000460_060--Hb_001410_130 Hb_000941_080 Hb_000941_080 Hb_000460_060--Hb_000941_080 Hb_006054_030 Hb_006054_030 Hb_000460_060--Hb_006054_030 Hb_007313_070 Hb_007313_070 Hb_004994_300--Hb_007313_070 Hb_000270_230 Hb_000270_230 Hb_004994_300--Hb_000270_230 Hb_172421_010 Hb_172421_010 Hb_004994_300--Hb_172421_010 Hb_004032_310 Hb_004032_310 Hb_004994_300--Hb_004032_310 Hb_003752_120 Hb_003752_120 Hb_004994_300--Hb_003752_120 Hb_002918_320 Hb_002918_320 Hb_008686_020--Hb_002918_320 Hb_008686_020--Hb_012490_010 Hb_008686_020--Hb_001951_100 Hb_002928_190 Hb_002928_190 Hb_008686_020--Hb_002928_190 Hb_004551_020 Hb_004551_020 Hb_008686_020--Hb_004551_020 Hb_000367_020 Hb_000367_020 Hb_008686_020--Hb_000367_020 Hb_004696_070--Hb_012490_010 Hb_004696_070--Hb_008686_020 Hb_002686_140 Hb_002686_140 Hb_004696_070--Hb_002686_140 Hb_020805_150 Hb_020805_150 Hb_004696_070--Hb_020805_150 Hb_004696_070--Hb_001951_100 Hb_000331_100 Hb_000331_100 Hb_004696_070--Hb_000331_100 Hb_012490_010--Hb_002928_190 Hb_012490_010--Hb_004551_020 Hb_012490_010--Hb_020805_150 Hb_000170_100 Hb_000170_100 Hb_012490_010--Hb_000170_100 Hb_001951_100--Hb_000367_020 Hb_001951_100--Hb_012490_010 Hb_000445_130 Hb_000445_130 Hb_001951_100--Hb_000445_130 Hb_000340_360 Hb_000340_360 Hb_001951_100--Hb_000340_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.67579 23.738 6.7652 10.2306 4.33698 4.4363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.05471 1.94849 5.69102 5.48188 10.2822

CAGE analysis