Hb_000270_230

Information

Type -
Description -
Location Contig270: 203322-208186
Sequence    

Annotation

kegg
ID rcu:RCOM_1513100
description galactosyltransferase, putative (EC:2.4.1.134)
nr
ID XP_012080173.1
description PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
swissprot
ID Q9LV16
description Probable beta-1,3-galactosyltransferase 19 OS=Arabidopsis thaliana GN=B3GALT19 PE=2 SV=2
trembl
ID A0A067K4N5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11557 PE=4 SV=1
Gene Ontology
ID GO:0000139
description probable beta- -galactosyltransferase 19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28179: 203389-208011
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_230 0.0 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
2 Hb_000069_780 0.0789806854 - - atpob1, putative [Ricinus communis]
3 Hb_000856_020 0.0823029907 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
4 Hb_000676_040 0.0909506728 - - hypothetical protein POPTR_0007s13320g [Populus trichocarpa]
5 Hb_001257_100 0.0927589597 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
6 Hb_006054_030 0.0931049344 - - PREDICTED: protein GPR107-like [Jatropha curcas]
7 Hb_000941_080 0.0960390659 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X3 [Populus euphratica]
8 Hb_004994_300 0.0966064115 - - synaptotagmin, putative [Ricinus communis]
9 Hb_001561_010 0.1000453963 - - PREDICTED: uncharacterized protein LOC105635045 isoform X1 [Jatropha curcas]
10 Hb_001410_130 0.1015300308 - - hypothetical protein POPTR_0001s10880g [Populus trichocarpa]
11 Hb_000059_130 0.1032269463 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
12 Hb_000371_060 0.1032453839 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
13 Hb_002928_190 0.1042212581 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]
14 Hb_001911_010 0.1047171799 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
15 Hb_003752_120 0.1053483137 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
16 Hb_125126_010 0.1066004737 desease resistance Gene Name: NB-ARC resistance family protein [Populus trichocarpa]
17 Hb_002248_120 0.1076790323 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
18 Hb_001369_780 0.109778475 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003605_220 0.1125773445 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
20 Hb_000473_150 0.1134304194 - - PREDICTED: pullulanase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000270_230 Hb_000270_230 Hb_000069_780 Hb_000069_780 Hb_000270_230--Hb_000069_780 Hb_000856_020 Hb_000856_020 Hb_000270_230--Hb_000856_020 Hb_000676_040 Hb_000676_040 Hb_000270_230--Hb_000676_040 Hb_001257_100 Hb_001257_100 Hb_000270_230--Hb_001257_100 Hb_006054_030 Hb_006054_030 Hb_000270_230--Hb_006054_030 Hb_000941_080 Hb_000941_080 Hb_000270_230--Hb_000941_080 Hb_000069_780--Hb_006054_030 Hb_001369_780 Hb_001369_780 Hb_000069_780--Hb_001369_780 Hb_000059_130 Hb_000059_130 Hb_000069_780--Hb_000059_130 Hb_002387_040 Hb_002387_040 Hb_000069_780--Hb_002387_040 Hb_003752_120 Hb_003752_120 Hb_000069_780--Hb_003752_120 Hb_003604_050 Hb_003604_050 Hb_000856_020--Hb_003604_050 Hb_002928_190 Hb_002928_190 Hb_000856_020--Hb_002928_190 Hb_002400_140 Hb_002400_140 Hb_000856_020--Hb_002400_140 Hb_008686_020 Hb_008686_020 Hb_000856_020--Hb_008686_020 Hb_006910_060 Hb_006910_060 Hb_000856_020--Hb_006910_060 Hb_002524_020 Hb_002524_020 Hb_000676_040--Hb_002524_020 Hb_000371_060 Hb_000371_060 Hb_000676_040--Hb_000371_060 Hb_000676_040--Hb_001257_100 Hb_008667_060 Hb_008667_060 Hb_000676_040--Hb_008667_060 Hb_000676_040--Hb_000059_130 Hb_000671_080 Hb_000671_080 Hb_001257_100--Hb_000671_080 Hb_000926_150 Hb_000926_150 Hb_001257_100--Hb_000926_150 Hb_026198_060 Hb_026198_060 Hb_001257_100--Hb_026198_060 Hb_002812_010 Hb_002812_010 Hb_001257_100--Hb_002812_010 Hb_000649_250 Hb_000649_250 Hb_001257_100--Hb_000649_250 Hb_002119_090 Hb_002119_090 Hb_001257_100--Hb_002119_090 Hb_006054_030--Hb_000941_080 Hb_006054_030--Hb_001369_780 Hb_001410_130 Hb_001410_130 Hb_006054_030--Hb_001410_130 Hb_000460_060 Hb_000460_060 Hb_006054_030--Hb_000460_060 Hb_000941_080--Hb_001410_130 Hb_001911_010 Hb_001911_010 Hb_000941_080--Hb_001911_010 Hb_001009_090 Hb_001009_090 Hb_000941_080--Hb_001009_090 Hb_000941_080--Hb_002119_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.63196 34.5812 10.5114 16.6658 5.61776 8.11208
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.90125 4.08976 3.63171 10.4436 10.5242

CAGE analysis