Hb_000856_020

Information

Type -
Description -
Location Contig856: 14447-19930
Sequence    

Annotation

kegg
ID rcu:RCOM_1513100
description galactosyltransferase, putative (EC:2.4.1.134)
nr
ID XP_012080173.1
description PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
swissprot
ID Q9LV16
description Probable beta-1,3-galactosyltransferase 19 OS=Arabidopsis thaliana GN=B3GALT19 PE=2 SV=2
trembl
ID A0A067K4N5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11557 PE=4 SV=1
Gene Ontology
ID GO:0005794
description probable beta- -galactosyltransferase 19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60561: 14573-14751 , PASA_asmbl_60562: 15327-15474 , PASA_asmbl_60563: 15678-18100
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_020 0.0 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
2 Hb_003604_050 0.0741014362 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
3 Hb_002928_190 0.0813861152 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]
4 Hb_000270_230 0.0823029907 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
5 Hb_002400_140 0.0843258847 - - protein kinase, putative [Ricinus communis]
6 Hb_008686_020 0.0927786951 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
7 Hb_006910_060 0.097429354 - - PREDICTED: MACPF domain-containing protein At1g14780-like [Jatropha curcas]
8 Hb_002005_030 0.0975678429 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
9 Hb_001257_100 0.1008811505 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
10 Hb_002005_120 0.1054071391 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
11 Hb_005188_040 0.1054987289 - - PREDICTED: protein furry homolog-like [Nicotiana sylvestris]
12 Hb_000406_110 0.1063229443 - - PREDICTED: transmembrane protein adipocyte-associated 1 [Jatropha curcas]
13 Hb_004785_030 0.1063573765 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
14 Hb_001341_160 0.1081624368 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
15 Hb_014720_020 0.1093730233 - - PREDICTED: serine/threonine-protein kinase ATM [Jatropha curcas]
16 Hb_000479_240 0.109512909 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
17 Hb_000434_070 0.1101303706 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
18 Hb_012490_010 0.1104811986 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
19 Hb_000751_140 0.1108253403 - - PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]
20 Hb_000676_040 0.1111251143 - - hypothetical protein POPTR_0007s13320g [Populus trichocarpa]

Gene co-expression network

sample Hb_000856_020 Hb_000856_020 Hb_003604_050 Hb_003604_050 Hb_000856_020--Hb_003604_050 Hb_002928_190 Hb_002928_190 Hb_000856_020--Hb_002928_190 Hb_000270_230 Hb_000270_230 Hb_000856_020--Hb_000270_230 Hb_002400_140 Hb_002400_140 Hb_000856_020--Hb_002400_140 Hb_008686_020 Hb_008686_020 Hb_000856_020--Hb_008686_020 Hb_006910_060 Hb_006910_060 Hb_000856_020--Hb_006910_060 Hb_001904_030 Hb_001904_030 Hb_003604_050--Hb_001904_030 Hb_001341_160 Hb_001341_160 Hb_003604_050--Hb_001341_160 Hb_000479_240 Hb_000479_240 Hb_003604_050--Hb_000479_240 Hb_005832_010 Hb_005832_010 Hb_003604_050--Hb_005832_010 Hb_003604_050--Hb_002928_190 Hb_004785_030 Hb_004785_030 Hb_003604_050--Hb_004785_030 Hb_012490_010 Hb_012490_010 Hb_002928_190--Hb_012490_010 Hb_005649_080 Hb_005649_080 Hb_002928_190--Hb_005649_080 Hb_020805_150 Hb_020805_150 Hb_002928_190--Hb_020805_150 Hb_002928_190--Hb_008686_020 Hb_003939_060 Hb_003939_060 Hb_002928_190--Hb_003939_060 Hb_000069_780 Hb_000069_780 Hb_000270_230--Hb_000069_780 Hb_000676_040 Hb_000676_040 Hb_000270_230--Hb_000676_040 Hb_001257_100 Hb_001257_100 Hb_000270_230--Hb_001257_100 Hb_006054_030 Hb_006054_030 Hb_000270_230--Hb_006054_030 Hb_000941_080 Hb_000941_080 Hb_000270_230--Hb_000941_080 Hb_003581_170 Hb_003581_170 Hb_002400_140--Hb_003581_170 Hb_000105_040 Hb_000105_040 Hb_002400_140--Hb_000105_040 Hb_000836_020 Hb_000836_020 Hb_002400_140--Hb_000836_020 Hb_002400_140--Hb_003604_050 Hb_004648_050 Hb_004648_050 Hb_002400_140--Hb_004648_050 Hb_188063_010 Hb_188063_010 Hb_002400_140--Hb_188063_010 Hb_002918_320 Hb_002918_320 Hb_008686_020--Hb_002918_320 Hb_008686_020--Hb_012490_010 Hb_001951_100 Hb_001951_100 Hb_008686_020--Hb_001951_100 Hb_004551_020 Hb_004551_020 Hb_008686_020--Hb_004551_020 Hb_000367_020 Hb_000367_020 Hb_008686_020--Hb_000367_020 Hb_006573_210 Hb_006573_210 Hb_006910_060--Hb_006573_210 Hb_006910_060--Hb_000479_240 Hb_001167_050 Hb_001167_050 Hb_006910_060--Hb_001167_050 Hb_000579_130 Hb_000579_130 Hb_006910_060--Hb_000579_130 Hb_031527_030 Hb_031527_030 Hb_006910_060--Hb_031527_030 Hb_000069_480 Hb_000069_480 Hb_006910_060--Hb_000069_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.10684 10.5864 2.64959 5.60237 2.42381 3.96268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.86578 1.76183 1.43822 4.16506 4.97466

CAGE analysis