Hb_002400_140

Information

Type -
Description -
Location Contig2400: 112595-116581
Sequence    

Annotation

kegg
ID rcu:RCOM_0923740
description protein kinase, putative
nr
ID XP_002515499.1
description protein kinase, putative [Ricinus communis]
swissprot
ID Q9FY48
description E3 ubiquitin-protein ligase KEG OS=Arabidopsis thaliana GN=KEG PE=1 SV=2
trembl
ID B9RP30
description Protein kinase, putative OS=Ricinus communis GN=RCOM_0923740 PE=4 SV=1
Gene Ontology
ID GO:0009507
description e3 ubiquitin-protein ligase keg

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25156: 114089-114798 , PASA_asmbl_25157: 115647-116499
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_140 0.0 - - protein kinase, putative [Ricinus communis]
2 Hb_003581_170 0.0692131217 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
3 Hb_000105_040 0.0739321205 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
4 Hb_000836_020 0.0746946194 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
5 Hb_003604_050 0.0784087745 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
6 Hb_004648_050 0.0809783307 - - ring finger protein, putative [Ricinus communis]
7 Hb_188063_010 0.0815402515 - - hypothetical protein RCOM_1469330 [Ricinus communis]
8 Hb_000406_110 0.0816637499 - - PREDICTED: transmembrane protein adipocyte-associated 1 [Jatropha curcas]
9 Hb_001699_280 0.0824416562 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]
10 Hb_011242_060 0.0830176764 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
11 Hb_000856_020 0.0843258847 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
12 Hb_005832_010 0.0855281251 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
13 Hb_002960_080 0.0887564631 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105635322 [Jatropha curcas]
14 Hb_000434_070 0.0893996569 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
15 Hb_001935_140 0.0903826093 - - CCR4-NOT transcription complex subunit 1 [Gossypium arboreum]
16 Hb_001951_170 0.090870961 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
17 Hb_000479_240 0.0915455774 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
18 Hb_043362_010 0.0923813191 - - hypothetical protein JCGZ_23765 [Jatropha curcas]
19 Hb_002333_050 0.0925491609 - - PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]
20 Hb_000679_330 0.0936289836 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]

Gene co-expression network

sample Hb_002400_140 Hb_002400_140 Hb_003581_170 Hb_003581_170 Hb_002400_140--Hb_003581_170 Hb_000105_040 Hb_000105_040 Hb_002400_140--Hb_000105_040 Hb_000836_020 Hb_000836_020 Hb_002400_140--Hb_000836_020 Hb_003604_050 Hb_003604_050 Hb_002400_140--Hb_003604_050 Hb_004648_050 Hb_004648_050 Hb_002400_140--Hb_004648_050 Hb_188063_010 Hb_188063_010 Hb_002400_140--Hb_188063_010 Hb_003581_170--Hb_000105_040 Hb_000176_100 Hb_000176_100 Hb_003581_170--Hb_000176_100 Hb_000949_010 Hb_000949_010 Hb_003581_170--Hb_000949_010 Hb_001699_280 Hb_001699_280 Hb_003581_170--Hb_001699_280 Hb_011242_060 Hb_011242_060 Hb_003581_170--Hb_011242_060 Hb_003581_170--Hb_000836_020 Hb_001935_140 Hb_001935_140 Hb_000105_040--Hb_001935_140 Hb_000105_040--Hb_001699_280 Hb_005542_140 Hb_005542_140 Hb_000105_040--Hb_005542_140 Hb_000069_410 Hb_000069_410 Hb_000105_040--Hb_000069_410 Hb_001951_170 Hb_001951_170 Hb_000105_040--Hb_001951_170 Hb_000836_020--Hb_011242_060 Hb_000836_020--Hb_001699_280 Hb_000265_090 Hb_000265_090 Hb_000836_020--Hb_000265_090 Hb_000703_130 Hb_000703_130 Hb_000836_020--Hb_000703_130 Hb_000836_020--Hb_188063_010 Hb_001904_030 Hb_001904_030 Hb_003604_050--Hb_001904_030 Hb_001341_160 Hb_001341_160 Hb_003604_050--Hb_001341_160 Hb_000479_240 Hb_000479_240 Hb_003604_050--Hb_000479_240 Hb_005832_010 Hb_005832_010 Hb_003604_050--Hb_005832_010 Hb_002928_190 Hb_002928_190 Hb_003604_050--Hb_002928_190 Hb_004785_030 Hb_004785_030 Hb_003604_050--Hb_004785_030 Hb_000406_110 Hb_000406_110 Hb_004648_050--Hb_000406_110 Hb_002960_080 Hb_002960_080 Hb_004648_050--Hb_002960_080 Hb_001006_100 Hb_001006_100 Hb_004648_050--Hb_001006_100 Hb_000069_480 Hb_000069_480 Hb_004648_050--Hb_000069_480 Hb_009028_010 Hb_009028_010 Hb_004648_050--Hb_009028_010 Hb_002333_050 Hb_002333_050 Hb_188063_010--Hb_002333_050 Hb_000025_710 Hb_000025_710 Hb_188063_010--Hb_000025_710 Hb_188063_010--Hb_001699_280 Hb_009486_170 Hb_009486_170 Hb_188063_010--Hb_009486_170 Hb_188063_010--Hb_003581_170 Hb_000261_150 Hb_000261_150 Hb_188063_010--Hb_000261_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.25942 16.2945 3.87607 8.23303 6.07449 8.995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.79723 3.26347 2.7194 8.18023 9.35042

CAGE analysis