Hb_004648_050

Information

Type -
Description -
Location Contig4648: 36640-39158
Sequence    

Annotation

kegg
ID rcu:RCOM_1613740
description ring finger protein, putative
nr
ID XP_002511792.1
description ring finger protein, putative [Ricinus communis]
swissprot
ID Q570X5
description RING-H2 finger protein ATL58 OS=Arabidopsis thaliana GN=ATL58 PE=2 SV=1
trembl
ID B9RDK3
description Ring finger protein, putative OS=Ricinus communis GN=RCOM_1613740 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ring-h2 finger protein atl40-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43923: 36966-38802
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004648_050 0.0 - - ring finger protein, putative [Ricinus communis]
2 Hb_002400_140 0.0809783307 - - protein kinase, putative [Ricinus communis]
3 Hb_000406_110 0.0848963989 - - PREDICTED: transmembrane protein adipocyte-associated 1 [Jatropha curcas]
4 Hb_002960_080 0.08686585 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105635322 [Jatropha curcas]
5 Hb_001006_100 0.095704438 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Jatropha curcas]
6 Hb_000069_480 0.0964396864 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009028_010 0.0964936541 - - PREDICTED: probable disease resistance protein At1g12280 [Jatropha curcas]
8 Hb_000270_030 0.0986512421 transcription factor TF Family: HB hypothetical protein POPTR_0015s07640g [Populus trichocarpa]
9 Hb_004994_090 0.1017465398 - - PREDICTED: uncharacterized protein LOC105643033 isoform X2 [Jatropha curcas]
10 Hb_079326_020 0.1024590719 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002374_290 0.1040674338 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X1 [Jatropha curcas]
12 Hb_043362_010 0.1045191492 - - hypothetical protein JCGZ_23765 [Jatropha curcas]
13 Hb_000479_240 0.1073128566 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
14 Hb_011849_040 0.1086008591 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_000069_130 0.1086412419 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
16 Hb_006573_210 0.1087730933 - - PREDICTED: protein SGT1 homolog [Jatropha curcas]
17 Hb_003581_170 0.1092317113 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
18 Hb_001935_140 0.1094053691 - - CCR4-NOT transcription complex subunit 1 [Gossypium arboreum]
19 Hb_003943_010 0.110110427 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003120_080 0.1104216252 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004648_050 Hb_004648_050 Hb_002400_140 Hb_002400_140 Hb_004648_050--Hb_002400_140 Hb_000406_110 Hb_000406_110 Hb_004648_050--Hb_000406_110 Hb_002960_080 Hb_002960_080 Hb_004648_050--Hb_002960_080 Hb_001006_100 Hb_001006_100 Hb_004648_050--Hb_001006_100 Hb_000069_480 Hb_000069_480 Hb_004648_050--Hb_000069_480 Hb_009028_010 Hb_009028_010 Hb_004648_050--Hb_009028_010 Hb_003581_170 Hb_003581_170 Hb_002400_140--Hb_003581_170 Hb_000105_040 Hb_000105_040 Hb_002400_140--Hb_000105_040 Hb_000836_020 Hb_000836_020 Hb_002400_140--Hb_000836_020 Hb_003604_050 Hb_003604_050 Hb_002400_140--Hb_003604_050 Hb_188063_010 Hb_188063_010 Hb_002400_140--Hb_188063_010 Hb_000406_110--Hb_002400_140 Hb_144744_010 Hb_144744_010 Hb_000406_110--Hb_144744_010 Hb_000059_020 Hb_000059_020 Hb_000406_110--Hb_000059_020 Hb_032808_030 Hb_032808_030 Hb_000406_110--Hb_032808_030 Hb_006573_210 Hb_006573_210 Hb_000406_110--Hb_006573_210 Hb_043362_010 Hb_043362_010 Hb_002960_080--Hb_043362_010 Hb_079326_020 Hb_079326_020 Hb_002960_080--Hb_079326_020 Hb_011849_040 Hb_011849_040 Hb_002960_080--Hb_011849_040 Hb_000069_470 Hb_000069_470 Hb_002960_080--Hb_000069_470 Hb_001188_020 Hb_001188_020 Hb_002960_080--Hb_001188_020 Hb_002960_080--Hb_003581_170 Hb_000780_170 Hb_000780_170 Hb_001006_100--Hb_000780_170 Hb_000260_640 Hb_000260_640 Hb_001006_100--Hb_000260_640 Hb_005260_010 Hb_005260_010 Hb_001006_100--Hb_005260_010 Hb_000398_020 Hb_000398_020 Hb_001006_100--Hb_000398_020 Hb_001277_300 Hb_001277_300 Hb_001006_100--Hb_001277_300 Hb_000046_070 Hb_000046_070 Hb_001006_100--Hb_000046_070 Hb_003912_040 Hb_003912_040 Hb_000069_480--Hb_003912_040 Hb_004128_130 Hb_004128_130 Hb_000069_480--Hb_004128_130 Hb_004429_010 Hb_004429_010 Hb_000069_480--Hb_004429_010 Hb_001489_100 Hb_001489_100 Hb_000069_480--Hb_001489_100 Hb_008253_020 Hb_008253_020 Hb_000069_480--Hb_008253_020 Hb_000418_010 Hb_000418_010 Hb_000069_480--Hb_000418_010 Hb_009028_010--Hb_144744_010 Hb_005188_040 Hb_005188_040 Hb_009028_010--Hb_005188_040 Hb_001541_250 Hb_001541_250 Hb_009028_010--Hb_001541_250 Hb_001935_140 Hb_001935_140 Hb_009028_010--Hb_001935_140 Hb_004785_030 Hb_004785_030 Hb_009028_010--Hb_004785_030 Hb_007054_040 Hb_007054_040 Hb_009028_010--Hb_007054_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.1697 6.91327 2.28137 3.85015 2.52279 4.11943
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.45154 1.71487 1.17497 2.86911 3.32865

CAGE analysis