Hb_001489_100

Information

Type -
Description -
Location Contig1489: 86843-90927
Sequence    

Annotation

kegg
ID rcu:RCOM_0697990
description Protein PPLZ12, putative
nr
ID XP_012091938.1
description PREDICTED: hypersensitive-induced response protein 2 [Jatropha curcas]
swissprot
ID Q9FM19
description Hypersensitive-induced response protein 1 OS=Arabidopsis thaliana GN=HIR1 PE=1 SV=1
trembl
ID A0A067JBQ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21697 PE=4 SV=1
Gene Ontology
ID GO:0016020
description hypersensitive-induced response protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12368: 86937-90930 , PASA_asmbl_12369: 86826-90930 , PASA_asmbl_12370: 89392-89804
cDNA
(Sanger)
(ID:Location)		 040_C13.ab1: 87480-90388 , 051_O24.ab1: 87480-90219

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001489_100 0.0 - - PREDICTED: hypersensitive-induced response protein 2 [Jatropha curcas]
2 Hb_000580_030 0.0660004689 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
3 Hb_002284_170 0.0689521571 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
4 Hb_008937_010 0.0690174857 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80A2 isoform X2 [Jatropha curcas]
5 Hb_001033_050 0.0697039282 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]
6 Hb_008253_020 0.0736606763 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
7 Hb_001135_120 0.0739182187 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
8 Hb_000139_130 0.0762288855 - - PREDICTED: chloride channel protein CLC-d isoform X1 [Jatropha curcas]
9 Hb_000120_910 0.0788611664 - - plant ubiquilin, putative [Ricinus communis]
10 Hb_000069_480 0.0791904768 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002081_120 0.0796434233 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
12 Hb_004429_010 0.0804495578 - - calcineurin-like phosphoesterase [Manihot esculenta]
13 Hb_000197_030 0.0813117514 - - hypothetical protein RCOM_1447500 [Ricinus communis]
14 Hb_000069_130 0.0817986098 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
15 Hb_009083_070 0.0831020308 - - PREDICTED: uncharacterized protein LOC105639870 [Jatropha curcas]
16 Hb_004129_070 0.0832517727 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
17 Hb_002045_250 0.0833832966 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
18 Hb_027654_020 0.0843425752 - - PREDICTED: LIMR family protein At5g01460 [Jatropha curcas]
19 Hb_012799_140 0.0852712812 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
20 Hb_000418_010 0.0857868475 - - PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001489_100 Hb_001489_100 Hb_000580_030 Hb_000580_030 Hb_001489_100--Hb_000580_030 Hb_002284_170 Hb_002284_170 Hb_001489_100--Hb_002284_170 Hb_008937_010 Hb_008937_010 Hb_001489_100--Hb_008937_010 Hb_001033_050 Hb_001033_050 Hb_001489_100--Hb_001033_050 Hb_008253_020 Hb_008253_020 Hb_001489_100--Hb_008253_020 Hb_001135_120 Hb_001135_120 Hb_001489_100--Hb_001135_120 Hb_000890_030 Hb_000890_030 Hb_000580_030--Hb_000890_030 Hb_007800_020 Hb_007800_020 Hb_000580_030--Hb_007800_020 Hb_027654_020 Hb_027654_020 Hb_000580_030--Hb_027654_020 Hb_005322_050 Hb_005322_050 Hb_000580_030--Hb_005322_050 Hb_001623_110 Hb_001623_110 Hb_000580_030--Hb_001623_110 Hb_000958_150 Hb_000958_150 Hb_002284_170--Hb_000958_150 Hb_002092_070 Hb_002092_070 Hb_002284_170--Hb_002092_070 Hb_004429_010 Hb_004429_010 Hb_002284_170--Hb_004429_010 Hb_000949_020 Hb_000949_020 Hb_002284_170--Hb_000949_020 Hb_000700_060 Hb_000700_060 Hb_002284_170--Hb_000700_060 Hb_009252_050 Hb_009252_050 Hb_002284_170--Hb_009252_050 Hb_010407_060 Hb_010407_060 Hb_008937_010--Hb_010407_060 Hb_008937_010--Hb_008253_020 Hb_000120_910 Hb_000120_910 Hb_008937_010--Hb_000120_910 Hb_001856_220 Hb_001856_220 Hb_008937_010--Hb_001856_220 Hb_000402_230 Hb_000402_230 Hb_008937_010--Hb_000402_230 Hb_004129_070 Hb_004129_070 Hb_001033_050--Hb_004129_070 Hb_000139_130 Hb_000139_130 Hb_001033_050--Hb_000139_130 Hb_004668_060 Hb_004668_060 Hb_001033_050--Hb_004668_060 Hb_001033_050--Hb_001135_120 Hb_001033_050--Hb_008253_020 Hb_010712_090 Hb_010712_090 Hb_001033_050--Hb_010712_090 Hb_008253_020--Hb_004129_070 Hb_008253_020--Hb_000402_230 Hb_007810_110 Hb_007810_110 Hb_008253_020--Hb_007810_110 Hb_002276_240 Hb_002276_240 Hb_008253_020--Hb_002276_240 Hb_001089_050 Hb_001089_050 Hb_008253_020--Hb_001089_050 Hb_000009_500 Hb_000009_500 Hb_008253_020--Hb_000009_500 Hb_001135_120--Hb_004129_070 Hb_002325_040 Hb_002325_040 Hb_001135_120--Hb_002325_040 Hb_009083_070 Hb_009083_070 Hb_001135_120--Hb_009083_070 Hb_003096_060 Hb_003096_060 Hb_001135_120--Hb_003096_060 Hb_184798_080 Hb_184798_080 Hb_001135_120--Hb_184798_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.6015 84.4342 49.8053 75.4088 48.2679 46.743
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.0795 17.8306 28.4416 47.3202 32.043

CAGE analysis