Hb_001033_050

Information

Type -
Description -
Location Contig1033: 173324-185007
Sequence    

Annotation

kegg
ID rcu:RCOM_0864770
description acetylornithine deacetylase, putative (EC:3.5.1.16)
nr
ID XP_012076243.1
description PREDICTED: acetylornithine deacetylase [Jatropha curcas]
swissprot
ID Q9C5C4
description Acetylornithine deacetylase OS=Arabidopsis thaliana GN=At4g17830 PE=2 SV=1
trembl
ID A0A067KE01
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12680 PE=4 SV=1
Gene Ontology
ID GO:0008777
description acetylornithine deacetylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01313: 173374-185055 , PASA_asmbl_01314: 178910-179148
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001033_050 0.0 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]
2 Hb_004129_070 0.0559581725 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
3 Hb_000139_130 0.0601390183 - - PREDICTED: chloride channel protein CLC-d isoform X1 [Jatropha curcas]
4 Hb_004668_060 0.0642573487 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
5 Hb_001135_120 0.0662589439 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
6 Hb_008253_020 0.0664121427 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
7 Hb_010712_090 0.0682692685 - - PREDICTED: uncharacterized protein LOC105631276 [Jatropha curcas]
8 Hb_002284_170 0.0687736649 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
9 Hb_006615_120 0.0691938855 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
10 Hb_000162_280 0.0696961759 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]
11 Hb_001489_100 0.0697039282 - - PREDICTED: hypersensitive-induced response protein 2 [Jatropha curcas]
12 Hb_000780_170 0.072000651 - - PREDICTED: OBERON-like protein [Jatropha curcas]
13 Hb_000917_160 0.0730897559 - - PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
14 Hb_002325_040 0.0745217979 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
15 Hb_001377_160 0.0755247112 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
16 Hb_000046_070 0.0764249044 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
17 Hb_008112_030 0.0767100373 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000174_060 0.0777907839 - - zinc finger family protein [Populus trichocarpa]
19 Hb_000960_050 0.0795263054 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
20 Hb_008226_090 0.0798279498 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001033_050 Hb_001033_050 Hb_004129_070 Hb_004129_070 Hb_001033_050--Hb_004129_070 Hb_000139_130 Hb_000139_130 Hb_001033_050--Hb_000139_130 Hb_004668_060 Hb_004668_060 Hb_001033_050--Hb_004668_060 Hb_001135_120 Hb_001135_120 Hb_001033_050--Hb_001135_120 Hb_008253_020 Hb_008253_020 Hb_001033_050--Hb_008253_020 Hb_010712_090 Hb_010712_090 Hb_001033_050--Hb_010712_090 Hb_000174_060 Hb_000174_060 Hb_004129_070--Hb_000174_060 Hb_002276_240 Hb_002276_240 Hb_004129_070--Hb_002276_240 Hb_004129_070--Hb_008253_020 Hb_006615_120 Hb_006615_120 Hb_004129_070--Hb_006615_120 Hb_004129_070--Hb_001135_120 Hb_004109_230 Hb_004109_230 Hb_000139_130--Hb_004109_230 Hb_000139_130--Hb_004668_060 Hb_001377_160 Hb_001377_160 Hb_000139_130--Hb_001377_160 Hb_061878_010 Hb_061878_010 Hb_000139_130--Hb_061878_010 Hb_004109_370 Hb_004109_370 Hb_000139_130--Hb_004109_370 Hb_004668_060--Hb_001377_160 Hb_007508_080 Hb_007508_080 Hb_004668_060--Hb_007508_080 Hb_005503_040 Hb_005503_040 Hb_004668_060--Hb_005503_040 Hb_000046_070 Hb_000046_070 Hb_004668_060--Hb_000046_070 Hb_002325_040 Hb_002325_040 Hb_001135_120--Hb_002325_040 Hb_009083_070 Hb_009083_070 Hb_001135_120--Hb_009083_070 Hb_003096_060 Hb_003096_060 Hb_001135_120--Hb_003096_060 Hb_184798_080 Hb_184798_080 Hb_001135_120--Hb_184798_080 Hb_000402_230 Hb_000402_230 Hb_008253_020--Hb_000402_230 Hb_007810_110 Hb_007810_110 Hb_008253_020--Hb_007810_110 Hb_008253_020--Hb_002276_240 Hb_001089_050 Hb_001089_050 Hb_008253_020--Hb_001089_050 Hb_000009_500 Hb_000009_500 Hb_008253_020--Hb_000009_500 Hb_000236_410 Hb_000236_410 Hb_010712_090--Hb_000236_410 Hb_010712_090--Hb_008253_020 Hb_002284_170 Hb_002284_170 Hb_010712_090--Hb_002284_170 Hb_008103_060 Hb_008103_060 Hb_010712_090--Hb_008103_060 Hb_000862_040 Hb_000862_040 Hb_010712_090--Hb_000862_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.3423 74.4224 40.5102 56.569 59.8924 56.0554
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.9565 21.4995 25.2799 42.8975 29.1406

CAGE analysis