Hb_008103_060

Information

Type -
Description -
Location Contig8103: 61950-63260
Sequence    

Annotation

kegg
ID tcc:TCM_037621
description Myristoyl-CoA:protein N-myristoyltransferase isoform 1
nr
ID XP_012076951.1
description PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
swissprot
ID Q9LTR9
description Glycylpeptide N-tetradecanoyltransferase 1 OS=Arabidopsis thaliana GN=NMT1 PE=1 SV=2
trembl
ID A0A067KPV7
description Glycylpeptide N-tetradecanoyltransferase OS=Jatropha curcas GN=JCGZ_07420 PE=3 SV=1
Gene Ontology
ID GO:0004379
description glycylpeptide n-tetradecanoyltransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59226: 61357-63636 , PASA_asmbl_59227: 61436-63636
cDNA
(Sanger)
(ID:Location)		 031_E10.ab1: 61357-62408 , 036_I03.ab1: 61357-62452

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008103_060 0.0 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
2 Hb_000070_080 0.0570678983 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
3 Hb_140049_040 0.0641996277 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
4 Hb_007635_030 0.0663752037 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
5 Hb_004195_200 0.0665443602 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
6 Hb_002876_130 0.0666083657 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
7 Hb_002043_140 0.0680337669 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
8 Hb_000928_220 0.068496023 - - PREDICTED: protein SCAI [Jatropha curcas]
9 Hb_000679_310 0.0687789369 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
10 Hb_000289_040 0.0706469002 - - Poly(A) polymerase alpha, putative [Ricinus communis]
11 Hb_002078_220 0.0719671092 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
12 Hb_001104_160 0.0721405599 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
13 Hb_006615_120 0.0744740627 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
14 Hb_003373_040 0.074737872 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
15 Hb_000345_140 0.0761035458 - - PREDICTED: autophagy-related protein 18a-like [Jatropha curcas]
16 Hb_010712_090 0.0761172369 - - PREDICTED: uncharacterized protein LOC105631276 [Jatropha curcas]
17 Hb_154114_010 0.0763567187 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
18 Hb_002006_040 0.0771264556 - - PREDICTED: translation initiation factor eIF-2B subunit delta isoform X1 [Jatropha curcas]
19 Hb_000162_280 0.0772440006 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]
20 Hb_003785_040 0.0779627211 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008103_060 Hb_008103_060 Hb_000070_080 Hb_000070_080 Hb_008103_060--Hb_000070_080 Hb_140049_040 Hb_140049_040 Hb_008103_060--Hb_140049_040 Hb_007635_030 Hb_007635_030 Hb_008103_060--Hb_007635_030 Hb_004195_200 Hb_004195_200 Hb_008103_060--Hb_004195_200 Hb_002876_130 Hb_002876_130 Hb_008103_060--Hb_002876_130 Hb_002043_140 Hb_002043_140 Hb_008103_060--Hb_002043_140 Hb_008511_090 Hb_008511_090 Hb_000070_080--Hb_008511_090 Hb_000479_220 Hb_000479_220 Hb_000070_080--Hb_000479_220 Hb_000162_280 Hb_000162_280 Hb_000070_080--Hb_000162_280 Hb_002078_110 Hb_002078_110 Hb_000070_080--Hb_002078_110 Hb_002078_220 Hb_002078_220 Hb_000070_080--Hb_002078_220 Hb_000174_060 Hb_000174_060 Hb_140049_040--Hb_000174_060 Hb_000289_040 Hb_000289_040 Hb_140049_040--Hb_000289_040 Hb_001767_140 Hb_001767_140 Hb_140049_040--Hb_001767_140 Hb_140049_040--Hb_002876_130 Hb_000230_090 Hb_000230_090 Hb_140049_040--Hb_000230_090 Hb_001277_020 Hb_001277_020 Hb_140049_040--Hb_001277_020 Hb_001454_280 Hb_001454_280 Hb_007635_030--Hb_001454_280 Hb_008112_030 Hb_008112_030 Hb_007635_030--Hb_008112_030 Hb_002174_020 Hb_002174_020 Hb_007635_030--Hb_002174_020 Hb_002329_040 Hb_002329_040 Hb_007635_030--Hb_002329_040 Hb_002107_070 Hb_002107_070 Hb_007635_030--Hb_002107_070 Hb_009615_170 Hb_009615_170 Hb_007635_030--Hb_009615_170 Hb_002375_010 Hb_002375_010 Hb_004195_200--Hb_002375_010 Hb_001104_160 Hb_001104_160 Hb_004195_200--Hb_001104_160 Hb_007576_110 Hb_007576_110 Hb_004195_200--Hb_007576_110 Hb_000366_120 Hb_000366_120 Hb_004195_200--Hb_000366_120 Hb_020831_030 Hb_020831_030 Hb_004195_200--Hb_020831_030 Hb_003640_040 Hb_003640_040 Hb_004195_200--Hb_003640_040 Hb_002876_130--Hb_000289_040 Hb_000928_220 Hb_000928_220 Hb_002876_130--Hb_000928_220 Hb_002876_130--Hb_002078_110 Hb_002876_130--Hb_004195_200 Hb_000076_160 Hb_000076_160 Hb_002876_130--Hb_000076_160 Hb_000976_210 Hb_000976_210 Hb_002043_140--Hb_000976_210 Hb_011491_010 Hb_011491_010 Hb_002043_140--Hb_011491_010 Hb_002006_040 Hb_002006_040 Hb_002043_140--Hb_002006_040 Hb_007163_120 Hb_007163_120 Hb_002043_140--Hb_007163_120 Hb_002043_140--Hb_009615_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.5455 39.1042 17.7835 22.4122 31.83 25.28
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2823 21.0915 17.4473 22.2967 13.443

CAGE analysis