Hb_002078_110

Information

Type -
Description -
Location Contig2078: 65330-69112
Sequence    

Annotation

kegg
ID rcu:RCOM_1080750
description hypothetical protein
nr
ID XP_012085659.1
description PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
swissprot
ID Q8GYF7
description Nuclear pore complex protein NUP54 OS=Arabidopsis thaliana GN=NUP54 PE=1 SV=1
trembl
ID A0A067JSD8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17945 PE=4 SV=1
Gene Ontology
ID GO:0005643
description nuclear pore complex protein nup54

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21414: 70014-70742
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_110 0.0 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
2 Hb_002835_230 0.0453647995 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
3 Hb_002686_250 0.0537981453 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
4 Hb_131646_010 0.0559097162 - - protein arginine n-methyltransferase, putative [Ricinus communis]
5 Hb_000309_040 0.0587348875 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
6 Hb_000928_220 0.0594836871 - - PREDICTED: protein SCAI [Jatropha curcas]
7 Hb_000070_080 0.0602304605 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
8 Hb_002876_130 0.0605567868 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
9 Hb_004785_100 0.0606694894 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000076_160 0.0634720369 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
11 Hb_014361_070 0.0637789068 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
12 Hb_004195_200 0.0639734325 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
13 Hb_138596_010 0.0639793061 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
14 Hb_000680_090 0.0644108407 - - Protein SEY1, putative [Ricinus communis]
15 Hb_001635_040 0.065558005 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
16 Hb_010381_090 0.0668464055 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
17 Hb_000289_040 0.0671548378 - - Poly(A) polymerase alpha, putative [Ricinus communis]
18 Hb_001347_040 0.0673244898 - - PREDICTED: uncharacterized protein LOC105633920 [Jatropha curcas]
19 Hb_001751_140 0.0676775516 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
20 Hb_003124_220 0.0676971524 - - PREDICTED: coiled-coil domain-containing protein 93 [Jatropha curcas]

Gene co-expression network

sample Hb_002078_110 Hb_002078_110 Hb_002835_230 Hb_002835_230 Hb_002078_110--Hb_002835_230 Hb_002686_250 Hb_002686_250 Hb_002078_110--Hb_002686_250 Hb_131646_010 Hb_131646_010 Hb_002078_110--Hb_131646_010 Hb_000309_040 Hb_000309_040 Hb_002078_110--Hb_000309_040 Hb_000928_220 Hb_000928_220 Hb_002078_110--Hb_000928_220 Hb_000070_080 Hb_000070_080 Hb_002078_110--Hb_000070_080 Hb_004785_100 Hb_004785_100 Hb_002835_230--Hb_004785_100 Hb_002835_230--Hb_131646_010 Hb_002835_230--Hb_002686_250 Hb_002823_030 Hb_002823_030 Hb_002835_230--Hb_002823_030 Hb_014361_070 Hb_014361_070 Hb_002835_230--Hb_014361_070 Hb_002686_250--Hb_131646_010 Hb_004055_150 Hb_004055_150 Hb_002686_250--Hb_004055_150 Hb_003029_030 Hb_003029_030 Hb_002686_250--Hb_003029_030 Hb_002686_250--Hb_004785_100 Hb_001926_030 Hb_001926_030 Hb_002686_250--Hb_001926_030 Hb_131646_010--Hb_004785_100 Hb_131646_010--Hb_003029_030 Hb_001347_040 Hb_001347_040 Hb_131646_010--Hb_001347_040 Hb_001051_080 Hb_001051_080 Hb_000309_040--Hb_001051_080 Hb_000076_160 Hb_000076_160 Hb_000309_040--Hb_000076_160 Hb_001751_140 Hb_001751_140 Hb_000309_040--Hb_001751_140 Hb_138596_010 Hb_138596_010 Hb_000309_040--Hb_138596_010 Hb_000309_040--Hb_002835_230 Hb_000402_080 Hb_000402_080 Hb_000928_220--Hb_000402_080 Hb_002876_130 Hb_002876_130 Hb_000928_220--Hb_002876_130 Hb_000928_220--Hb_000076_160 Hb_000928_220--Hb_002835_230 Hb_002046_110 Hb_002046_110 Hb_000928_220--Hb_002046_110 Hb_008511_090 Hb_008511_090 Hb_000070_080--Hb_008511_090 Hb_008103_060 Hb_008103_060 Hb_000070_080--Hb_008103_060 Hb_000479_220 Hb_000479_220 Hb_000070_080--Hb_000479_220 Hb_000162_280 Hb_000162_280 Hb_000070_080--Hb_000162_280 Hb_002078_220 Hb_002078_220 Hb_000070_080--Hb_002078_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.32725 5.98196 5.35785 4.23659 6.73709 6.02285
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.6992 4.01033 4.0994 3.82961 3.02775

CAGE analysis