Hb_131646_010

Information

Type -
Description -
Location Contig131646: 808-3348
Sequence    

Annotation

kegg
ID rcu:RCOM_1454120
description protein arginine n-methyltransferase, putative (EC:2.1.1.125)
nr
ID XP_002513131.1
description protein arginine n-methyltransferase, putative [Ricinus communis]
swissprot
ID Q08A71
description Probable protein arginine N-methyltransferase 6 OS=Arabidopsis thaliana GN=PRMT6 PE=2 SV=1
trembl
ID B9RGH9
description Protein arginine n-methyltransferase, putative OS=Ricinus communis GN=RCOM_1454120 PE=4 SV=1
Gene Ontology
ID GO:0008469
description probable protein arginine n-methyltransferase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09187: 2889-3252
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_131646_010 0.0 - - protein arginine n-methyltransferase, putative [Ricinus communis]
2 Hb_002686_250 0.0356635007 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
3 Hb_004785_100 0.0386568894 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002835_230 0.0494585792 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
5 Hb_003029_030 0.0543984234 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
6 Hb_002078_110 0.0559097162 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
7 Hb_001347_040 0.0563120675 - - PREDICTED: uncharacterized protein LOC105633920 [Jatropha curcas]
8 Hb_004055_150 0.0637407498 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004209_020 0.0638481208 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like isoform X1 [Jatropha curcas]
10 Hb_006620_020 0.0639042935 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
11 Hb_001408_100 0.0686641838 - - pseudouridylate synthase, putative [Ricinus communis]
12 Hb_003124_220 0.0695963664 - - PREDICTED: coiled-coil domain-containing protein 93 [Jatropha curcas]
13 Hb_005965_030 0.0714721167 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
14 Hb_001486_340 0.0723529131 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
15 Hb_001926_030 0.0729451949 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
16 Hb_000853_230 0.0730492901 - - syntaxin, putative [Ricinus communis]
17 Hb_010068_040 0.0733181056 - - PREDICTED: uncharacterized protein LOC105632964 [Jatropha curcas]
18 Hb_007416_300 0.0736685953 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
19 Hb_006960_050 0.0739606153 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
20 Hb_003018_130 0.0740854604 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]

Gene co-expression network

sample Hb_131646_010 Hb_131646_010 Hb_002686_250 Hb_002686_250 Hb_131646_010--Hb_002686_250 Hb_004785_100 Hb_004785_100 Hb_131646_010--Hb_004785_100 Hb_002835_230 Hb_002835_230 Hb_131646_010--Hb_002835_230 Hb_003029_030 Hb_003029_030 Hb_131646_010--Hb_003029_030 Hb_002078_110 Hb_002078_110 Hb_131646_010--Hb_002078_110 Hb_001347_040 Hb_001347_040 Hb_131646_010--Hb_001347_040 Hb_004055_150 Hb_004055_150 Hb_002686_250--Hb_004055_150 Hb_002686_250--Hb_003029_030 Hb_002686_250--Hb_004785_100 Hb_001926_030 Hb_001926_030 Hb_002686_250--Hb_001926_030 Hb_002686_250--Hb_002078_110 Hb_004785_100--Hb_002835_230 Hb_001821_160 Hb_001821_160 Hb_004785_100--Hb_001821_160 Hb_006960_050 Hb_006960_050 Hb_004785_100--Hb_006960_050 Hb_004785_100--Hb_002078_110 Hb_002835_230--Hb_002078_110 Hb_002835_230--Hb_002686_250 Hb_002823_030 Hb_002823_030 Hb_002835_230--Hb_002823_030 Hb_014361_070 Hb_014361_070 Hb_002835_230--Hb_014361_070 Hb_033720_010 Hb_033720_010 Hb_003029_030--Hb_033720_010 Hb_001408_100 Hb_001408_100 Hb_003029_030--Hb_001408_100 Hb_002351_020 Hb_002351_020 Hb_003029_030--Hb_002351_020 Hb_010068_040 Hb_010068_040 Hb_003029_030--Hb_010068_040 Hb_000309_040 Hb_000309_040 Hb_002078_110--Hb_000309_040 Hb_000928_220 Hb_000928_220 Hb_002078_110--Hb_000928_220 Hb_000070_080 Hb_000070_080 Hb_002078_110--Hb_000070_080 Hb_143395_010 Hb_143395_010 Hb_001347_040--Hb_143395_010 Hb_001377_070 Hb_001377_070 Hb_001347_040--Hb_001377_070 Hb_003124_220 Hb_003124_220 Hb_001347_040--Hb_003124_220 Hb_000256_190 Hb_000256_190 Hb_001347_040--Hb_000256_190 Hb_001347_040--Hb_002078_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.02193 8.22211 8.48181 5.65893 13.4497 10.4537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.33305 6.47069 5.96677 6.70364 4.4146

CAGE analysis