Hb_002351_020

Information

Type -
Description -
Location Contig2351: 50069-55523
Sequence    

Annotation

kegg
ID rcu:RCOM_0410040
description RNA binding protein, putative
nr
ID XP_012081701.1
description PREDICTED: rRNA methyltransferase 3B, mitochondrial [Jatropha curcas]
swissprot
ID P74261
description Uncharacterized tRNA/rRNA methyltransferase slr1673 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1673 PE=3 SV=1
trembl
ID A0A067K0R1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18731 PE=4 SV=1
Gene Ontology
ID GO:0003723
description rrna methyltransferase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24628: 50057-55539 , PASA_asmbl_24629: 51830-55231
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002351_020 0.0 - - PREDICTED: rRNA methyltransferase 3B, mitochondrial [Jatropha curcas]
2 Hb_000032_490 0.0582775454 - - PREDICTED: uncharacterized protein At4g10930-like [Jatropha curcas]
3 Hb_003029_030 0.0668034843 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
4 Hb_000832_090 0.078326106 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
5 Hb_005489_080 0.0835242767 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002686_250 0.0864265011 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
7 Hb_001408_100 0.0869824823 - - pseudouridylate synthase, putative [Ricinus communis]
8 Hb_002025_110 0.0871664683 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Jatropha curcas]
9 Hb_131646_010 0.0877689282 - - protein arginine n-methyltransferase, putative [Ricinus communis]
10 Hb_000732_120 0.0888875665 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
11 Hb_001771_120 0.0915012351 - - K+ transport growth defect-like protein [Hevea brasiliensis]
12 Hb_002499_070 0.0915768924 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
13 Hb_160233_010 0.0924520845 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210 [Jatropha curcas]
14 Hb_004724_320 0.0947297479 - - Vesicle-associated membrane protein, putative [Ricinus communis]
15 Hb_000261_220 0.0951189573 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
16 Hb_011609_050 0.0969304454 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
17 Hb_021422_010 0.097235961 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
18 Hb_033720_010 0.0972372943 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
19 Hb_000334_270 0.0974669543 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
20 Hb_001541_260 0.0975482274 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_002351_020 Hb_002351_020 Hb_000032_490 Hb_000032_490 Hb_002351_020--Hb_000032_490 Hb_003029_030 Hb_003029_030 Hb_002351_020--Hb_003029_030 Hb_000832_090 Hb_000832_090 Hb_002351_020--Hb_000832_090 Hb_005489_080 Hb_005489_080 Hb_002351_020--Hb_005489_080 Hb_002686_250 Hb_002686_250 Hb_002351_020--Hb_002686_250 Hb_001408_100 Hb_001408_100 Hb_002351_020--Hb_001408_100 Hb_021422_010 Hb_021422_010 Hb_000032_490--Hb_021422_010 Hb_000946_120 Hb_000946_120 Hb_000032_490--Hb_000946_120 Hb_000032_490--Hb_000832_090 Hb_001541_260 Hb_001541_260 Hb_000032_490--Hb_001541_260 Hb_000365_140 Hb_000365_140 Hb_000032_490--Hb_000365_140 Hb_003029_030--Hb_002686_250 Hb_131646_010 Hb_131646_010 Hb_003029_030--Hb_131646_010 Hb_033720_010 Hb_033720_010 Hb_003029_030--Hb_033720_010 Hb_003029_030--Hb_001408_100 Hb_010068_040 Hb_010068_040 Hb_003029_030--Hb_010068_040 Hb_000732_120 Hb_000732_120 Hb_000832_090--Hb_000732_120 Hb_001347_040 Hb_001347_040 Hb_000832_090--Hb_001347_040 Hb_001377_070 Hb_001377_070 Hb_000832_090--Hb_001377_070 Hb_000959_270 Hb_000959_270 Hb_000832_090--Hb_000959_270 Hb_031527_020 Hb_031527_020 Hb_005489_080--Hb_031527_020 Hb_005489_080--Hb_000732_120 Hb_004128_050 Hb_004128_050 Hb_005489_080--Hb_004128_050 Hb_003785_040 Hb_003785_040 Hb_005489_080--Hb_003785_040 Hb_111198_010 Hb_111198_010 Hb_005489_080--Hb_111198_010 Hb_002025_110 Hb_002025_110 Hb_005489_080--Hb_002025_110 Hb_002686_250--Hb_131646_010 Hb_004055_150 Hb_004055_150 Hb_002686_250--Hb_004055_150 Hb_004785_100 Hb_004785_100 Hb_002686_250--Hb_004785_100 Hb_001926_030 Hb_001926_030 Hb_002686_250--Hb_001926_030 Hb_002078_110 Hb_002078_110 Hb_002686_250--Hb_002078_110 Hb_001408_100--Hb_131646_010 Hb_000160_350 Hb_000160_350 Hb_001408_100--Hb_000160_350 Hb_005965_030 Hb_005965_030 Hb_001408_100--Hb_005965_030 Hb_002157_260 Hb_002157_260 Hb_001408_100--Hb_002157_260 Hb_000771_180 Hb_000771_180 Hb_001408_100--Hb_000771_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.0701 4.68643 4.08349 1.90965 7.75596 5.90923
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.41373 3.75978 3.16891 1.75998 2.29574

CAGE analysis