Hb_000032_490

Information

Type -
Description -
Location Contig32: 391190-397458
Sequence    

Annotation

kegg
ID tcc:TCM_016489
description hypothetical protein
nr
ID XP_012086691.1
description PREDICTED: uncharacterized protein At4g10930-like [Jatropha curcas]
swissprot
ID Q8L7I1
description Uncharacterized protein At4g10930 OS=Arabidopsis thaliana GN=At4g10930 PE=2 SV=1
trembl
ID A0A067JR50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20429 PE=4 SV=1
Gene Ontology
ID GO:0008270
description PREDICTED: uncharacterized protein At4g10930-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33750: 364920-392552 , PASA_asmbl_33751: 392995-393447 , PASA_asmbl_33752: 393507-393673 , PASA_asmbl_33753: 393990-395576 , PASA_asmbl_33754: 395745-397171
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_490 0.0 - - PREDICTED: uncharacterized protein At4g10930-like [Jatropha curcas]
2 Hb_002351_020 0.0582775454 - - PREDICTED: rRNA methyltransferase 3B, mitochondrial [Jatropha curcas]
3 Hb_021422_010 0.0630996411 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
4 Hb_000946_120 0.0686881167 - - DNA binding protein, putative [Ricinus communis]
5 Hb_000832_090 0.0725415778 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
6 Hb_001541_260 0.0730335244 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
7 Hb_000365_140 0.0760202014 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase [Jatropha curcas]
8 Hb_144787_030 0.0764555781 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
9 Hb_002221_050 0.0766824826 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
10 Hb_001771_120 0.0767674832 - - K+ transport growth defect-like protein [Hevea brasiliensis]
11 Hb_000003_290 0.077513475 - - hypothetical protein JCGZ_24486 [Jatropha curcas]
12 Hb_004055_150 0.0778610121 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000502_050 0.078449461 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
14 Hb_003994_200 0.0803383539 - - PREDICTED: uncharacterized protein LOC105646142 [Jatropha curcas]
15 Hb_002686_250 0.0812322448 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
16 Hb_005489_080 0.0817138238 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003018_130 0.0819624971 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
18 Hb_031527_020 0.0821249012 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
19 Hb_000320_380 0.0826099901 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
20 Hb_000768_070 0.0830071068 transcription factor TF Family: SNF2 PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000032_490 Hb_000032_490 Hb_002351_020 Hb_002351_020 Hb_000032_490--Hb_002351_020 Hb_021422_010 Hb_021422_010 Hb_000032_490--Hb_021422_010 Hb_000946_120 Hb_000946_120 Hb_000032_490--Hb_000946_120 Hb_000832_090 Hb_000832_090 Hb_000032_490--Hb_000832_090 Hb_001541_260 Hb_001541_260 Hb_000032_490--Hb_001541_260 Hb_000365_140 Hb_000365_140 Hb_000032_490--Hb_000365_140 Hb_003029_030 Hb_003029_030 Hb_002351_020--Hb_003029_030 Hb_002351_020--Hb_000832_090 Hb_005489_080 Hb_005489_080 Hb_002351_020--Hb_005489_080 Hb_002686_250 Hb_002686_250 Hb_002351_020--Hb_002686_250 Hb_001408_100 Hb_001408_100 Hb_002351_020--Hb_001408_100 Hb_006623_020 Hb_006623_020 Hb_021422_010--Hb_006623_020 Hb_003018_060 Hb_003018_060 Hb_021422_010--Hb_003018_060 Hb_001828_160 Hb_001828_160 Hb_021422_010--Hb_001828_160 Hb_000808_250 Hb_000808_250 Hb_021422_010--Hb_000808_250 Hb_006960_050 Hb_006960_050 Hb_021422_010--Hb_006960_050 Hb_012132_030 Hb_012132_030 Hb_000946_120--Hb_012132_030 Hb_144787_030 Hb_144787_030 Hb_000946_120--Hb_144787_030 Hb_000946_120--Hb_000365_140 Hb_000422_140 Hb_000422_140 Hb_000946_120--Hb_000422_140 Hb_000946_120--Hb_001541_260 Hb_000732_120 Hb_000732_120 Hb_000832_090--Hb_000732_120 Hb_001347_040 Hb_001347_040 Hb_000832_090--Hb_001347_040 Hb_001377_070 Hb_001377_070 Hb_000832_090--Hb_001377_070 Hb_000959_270 Hb_000959_270 Hb_000832_090--Hb_000959_270 Hb_001541_260--Hb_144787_030 Hb_000236_100 Hb_000236_100 Hb_001541_260--Hb_000236_100 Hb_000139_250 Hb_000139_250 Hb_001541_260--Hb_000139_250 Hb_000465_470 Hb_000465_470 Hb_001541_260--Hb_000465_470 Hb_002477_130 Hb_002477_130 Hb_000365_140--Hb_002477_130 Hb_000365_140--Hb_000422_140 Hb_000640_220 Hb_000640_220 Hb_000365_140--Hb_000640_220 Hb_005895_040 Hb_005895_040 Hb_000365_140--Hb_005895_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.8684 13.1335 10.0707 5.85208 23.2347 15.9398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.99474 9.98416 9.3388 5.93637 7.51768

CAGE analysis