Hb_012132_030

Information

Type -
Description -
Location Contig12132: 18043-38986
Sequence    

Annotation

kegg
ID rcu:RCOM_0593640
description kinesin light chain, putative
nr
ID XP_012086427.1
description PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
swissprot
ID Q5R8E2
description Kinesin light chain 3 OS=Pongo abelii GN=KLC3 PE=2 SV=1
trembl
ID B9T2R5
description Kinesin light chain, putative OS=Ricinus communis GN=RCOM_0593640 PE=4 SV=1
Gene Ontology
ID GO:0005515
description kinesin light

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06533: 14312-17508 , PASA_asmbl_06534: 17203-38853 , PASA_asmbl_06535: 20318-38764
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012132_030 0.0 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
2 Hb_000946_120 0.0497760167 - - DNA binding protein, putative [Ricinus communis]
3 Hb_017168_010 0.077669433 - - conserved hypothetical protein [Ricinus communis]
4 Hb_010222_080 0.0788241601 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
5 Hb_001541_260 0.0803905656 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
6 Hb_144787_030 0.0882613541 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
7 Hb_001136_100 0.0899055016 - - hypothetical protein MTR_085s0013 [Medicago truncatula]
8 Hb_000139_250 0.09183712 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
9 Hb_001584_290 0.0924666122 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
10 Hb_004512_020 0.0932876395 - - PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
11 Hb_001136_090 0.093962689 - - Protein PNS1, putative [Ricinus communis]
12 Hb_002942_220 0.0943029258 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
13 Hb_000422_140 0.0959746972 - - PREDICTED: apoptosis-inducing factor 2-like isoform X1 [Jatropha curcas]
14 Hb_002367_130 0.0963754027 - - UNC-50 family protein isoform 1 [Theobroma cacao]
15 Hb_001541_020 0.0964287272 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
16 Hb_000236_100 0.0969053048 - - Dynein alpha chain, flagellar outer arm [Gossypium arboreum]
17 Hb_004162_280 0.0989620417 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
18 Hb_000365_140 0.1004323488 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase [Jatropha curcas]
19 Hb_001083_030 0.1009110917 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
20 Hb_008143_030 0.1016436926 - - PREDICTED: uncharacterized protein LOC105650295 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_012132_030 Hb_012132_030 Hb_000946_120 Hb_000946_120 Hb_012132_030--Hb_000946_120 Hb_017168_010 Hb_017168_010 Hb_012132_030--Hb_017168_010 Hb_010222_080 Hb_010222_080 Hb_012132_030--Hb_010222_080 Hb_001541_260 Hb_001541_260 Hb_012132_030--Hb_001541_260 Hb_144787_030 Hb_144787_030 Hb_012132_030--Hb_144787_030 Hb_001136_100 Hb_001136_100 Hb_012132_030--Hb_001136_100 Hb_000946_120--Hb_144787_030 Hb_000032_490 Hb_000032_490 Hb_000946_120--Hb_000032_490 Hb_000365_140 Hb_000365_140 Hb_000946_120--Hb_000365_140 Hb_000422_140 Hb_000422_140 Hb_000946_120--Hb_000422_140 Hb_000946_120--Hb_001541_260 Hb_000107_100 Hb_000107_100 Hb_017168_010--Hb_000107_100 Hb_017168_010--Hb_010222_080 Hb_000340_510 Hb_000340_510 Hb_017168_010--Hb_000340_510 Hb_002026_110 Hb_002026_110 Hb_017168_010--Hb_002026_110 Hb_002942_220 Hb_002942_220 Hb_017168_010--Hb_002942_220 Hb_001584_290 Hb_001584_290 Hb_010222_080--Hb_001584_290 Hb_010222_080--Hb_002942_220 Hb_000139_250 Hb_000139_250 Hb_010222_080--Hb_000139_250 Hb_004678_020 Hb_004678_020 Hb_010222_080--Hb_004678_020 Hb_004162_280 Hb_004162_280 Hb_010222_080--Hb_004162_280 Hb_001541_260--Hb_144787_030 Hb_000236_100 Hb_000236_100 Hb_001541_260--Hb_000236_100 Hb_001541_260--Hb_000139_250 Hb_000465_470 Hb_000465_470 Hb_001541_260--Hb_000465_470 Hb_001541_260--Hb_000032_490 Hb_144787_030--Hb_004162_280 Hb_144787_030--Hb_000139_250 Hb_144787_030--Hb_000236_100 Hb_144787_030--Hb_000422_140 Hb_001136_090 Hb_001136_090 Hb_001136_100--Hb_001136_090 Hb_002367_130 Hb_002367_130 Hb_001136_100--Hb_002367_130 Hb_003001_150 Hb_003001_150 Hb_001136_100--Hb_003001_150 Hb_007304_110 Hb_007304_110 Hb_001136_100--Hb_007304_110 Hb_000207_310 Hb_000207_310 Hb_001136_100--Hb_000207_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.291 10.2281 5.92676 4.77983 32.1315 14.6271
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.60331 10.536 13.1062 7.64121 7.05906

CAGE analysis