Hb_003001_150

Information

Type -
Description -
Location Contig3001: 168153-170489
Sequence    

Annotation

kegg
ID rcu:RCOM_0814140
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002518803.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID P0C894
description Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
trembl
ID B9RY36
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0814140 PE=4 SV=1
Gene Ontology
ID GO:0005739
description pentatricopeptide repeat-containing protein at2g02150

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003001_150 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_003544_100 0.0850533467 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
3 Hb_002276_060 0.0876699233 - - hypothetical protein CISIN_1g002019mg [Citrus sinensis]
4 Hb_003052_150 0.0889869158 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
5 Hb_001136_100 0.0942112565 - - hypothetical protein MTR_085s0013 [Medicago truncatula]
6 Hb_000729_050 0.0973029525 - - Pinin, putative [Ricinus communis]
7 Hb_007943_100 0.0977826365 - - unnamed protein product [Coffea canephora]
8 Hb_006915_070 0.0997551277 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
9 Hb_007586_030 0.0998210385 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
10 Hb_010436_030 0.099938044 - - Ribonuclease III, putative [Ricinus communis]
11 Hb_002909_050 0.1002780359 - - conserved hypothetical protein [Ricinus communis]
12 Hb_126643_010 0.1004938663 - - Protein transport protein Sec24C, putative [Ricinus communis]
13 Hb_000034_040 0.1013110128 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
14 Hb_000768_190 0.1020906388 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
15 Hb_000005_380 0.1030804751 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
16 Hb_002193_010 0.1038544682 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
17 Hb_002681_070 0.1049765309 - - PREDICTED: uncharacterized protein LOC105633833 isoform X1 [Jatropha curcas]
18 Hb_008247_010 0.106006037 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
19 Hb_007545_030 0.1062358066 - - conserved hypothetical protein [Ricinus communis]
20 Hb_009411_010 0.106329809 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]

Gene co-expression network

sample Hb_003001_150 Hb_003001_150 Hb_003544_100 Hb_003544_100 Hb_003001_150--Hb_003544_100 Hb_002276_060 Hb_002276_060 Hb_003001_150--Hb_002276_060 Hb_003052_150 Hb_003052_150 Hb_003001_150--Hb_003052_150 Hb_001136_100 Hb_001136_100 Hb_003001_150--Hb_001136_100 Hb_000729_050 Hb_000729_050 Hb_003001_150--Hb_000729_050 Hb_007943_100 Hb_007943_100 Hb_003001_150--Hb_007943_100 Hb_009411_010 Hb_009411_010 Hb_003544_100--Hb_009411_010 Hb_001599_030 Hb_001599_030 Hb_003544_100--Hb_001599_030 Hb_003938_080 Hb_003938_080 Hb_003544_100--Hb_003938_080 Hb_006915_060 Hb_006915_060 Hb_003544_100--Hb_006915_060 Hb_000320_200 Hb_000320_200 Hb_003544_100--Hb_000320_200 Hb_003216_080 Hb_003216_080 Hb_003544_100--Hb_003216_080 Hb_000170_190 Hb_000170_190 Hb_002276_060--Hb_000170_190 Hb_000034_040 Hb_000034_040 Hb_002276_060--Hb_000034_040 Hb_012286_010 Hb_012286_010 Hb_002276_060--Hb_012286_010 Hb_002193_010 Hb_002193_010 Hb_002276_060--Hb_002193_010 Hb_005181_110 Hb_005181_110 Hb_002276_060--Hb_005181_110 Hb_009627_010 Hb_009627_010 Hb_003052_150--Hb_009627_010 Hb_010381_060 Hb_010381_060 Hb_003052_150--Hb_010381_060 Hb_028487_110 Hb_028487_110 Hb_003052_150--Hb_028487_110 Hb_003052_150--Hb_003544_100 Hb_003052_150--Hb_009411_010 Hb_001638_250 Hb_001638_250 Hb_003052_150--Hb_001638_250 Hb_001136_090 Hb_001136_090 Hb_001136_100--Hb_001136_090 Hb_002367_130 Hb_002367_130 Hb_001136_100--Hb_002367_130 Hb_012132_030 Hb_012132_030 Hb_001136_100--Hb_012132_030 Hb_007304_110 Hb_007304_110 Hb_001136_100--Hb_007304_110 Hb_000207_310 Hb_000207_310 Hb_001136_100--Hb_000207_310 Hb_000184_110 Hb_000184_110 Hb_000729_050--Hb_000184_110 Hb_007407_040 Hb_007407_040 Hb_000729_050--Hb_007407_040 Hb_011316_110 Hb_011316_110 Hb_000729_050--Hb_011316_110 Hb_004452_100 Hb_004452_100 Hb_000729_050--Hb_004452_100 Hb_008143_030 Hb_008143_030 Hb_000729_050--Hb_008143_030 Hb_000768_190 Hb_000768_190 Hb_007943_100--Hb_000768_190 Hb_028639_010 Hb_028639_010 Hb_007943_100--Hb_028639_010 Hb_000037_110 Hb_000037_110 Hb_007943_100--Hb_000037_110 Hb_002150_030 Hb_002150_030 Hb_007943_100--Hb_002150_030 Hb_000059_150 Hb_000059_150 Hb_007943_100--Hb_000059_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.26667 0.82615 0.679784 0.702877 3.21454 2.96952
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.15987 1.12213 2.02217 1.62877 1.87339

CAGE analysis