Hb_028639_010

Information

Type -
Description -
Location Contig28639: 17288-21248
Sequence    

Annotation

kegg
ID rcu:RCOM_0777160
description transporter, putative
nr
ID XP_002521900.1
description transporter, putative [Ricinus communis]
swissprot
ID Q9ZPS7
description Transmembrane 9 superfamily member 3 OS=Arabidopsis thaliana GN=TMN3 PE=2 SV=1
trembl
ID B9S7D1
description Transporter, putative OS=Ricinus communis GN=RCOM_0777160 PE=4 SV=1
Gene Ontology
ID GO:0000139
description phagocytic receptor 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29891: 18292-21209
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028639_010 0.0 - - transporter, putative [Ricinus communis]
2 Hb_000048_140 0.0482403434 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
3 Hb_009535_020 0.0725870928 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
4 Hb_002200_130 0.0756506983 - - PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Jatropha curcas]
5 Hb_003090_080 0.0760343163 transcription factor TF Family: MYB PREDICTED: myb-like protein B [Jatropha curcas]
6 Hb_000600_070 0.0786543153 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
7 Hb_000173_510 0.0787085637 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
8 Hb_002255_050 0.0823903593 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
9 Hb_009627_010 0.0825636687 - - Protein dom-3, putative [Ricinus communis]
10 Hb_000160_040 0.0862984992 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
11 Hb_000283_070 0.0866641524 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
12 Hb_000059_150 0.0888127364 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 [Theobroma cacao]
13 Hb_000207_390 0.0898200347 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
14 Hb_003362_040 0.0899203493 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
15 Hb_004102_140 0.0899643394 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001047_030 0.0900297909 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
17 Hb_000347_130 0.0900435477 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
18 Hb_007192_080 0.092731266 - - PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X2 [Jatropha curcas]
19 Hb_001691_120 0.0931357712 desease resistance Gene Name: AAA PREDICTED: vesicle-fusing ATPase [Jatropha curcas]
20 Hb_028487_110 0.0934689855 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]

Gene co-expression network

sample Hb_028639_010 Hb_028639_010 Hb_000048_140 Hb_000048_140 Hb_028639_010--Hb_000048_140 Hb_009535_020 Hb_009535_020 Hb_028639_010--Hb_009535_020 Hb_002200_130 Hb_002200_130 Hb_028639_010--Hb_002200_130 Hb_003090_080 Hb_003090_080 Hb_028639_010--Hb_003090_080 Hb_000600_070 Hb_000600_070 Hb_028639_010--Hb_000600_070 Hb_000173_510 Hb_000173_510 Hb_028639_010--Hb_000173_510 Hb_000048_140--Hb_002200_130 Hb_000034_050 Hb_000034_050 Hb_000048_140--Hb_000034_050 Hb_003362_040 Hb_003362_040 Hb_000048_140--Hb_003362_040 Hb_007407_040 Hb_007407_040 Hb_000048_140--Hb_007407_040 Hb_000230_330 Hb_000230_330 Hb_000048_140--Hb_000230_330 Hb_009535_020--Hb_000600_070 Hb_000023_190 Hb_000023_190 Hb_009535_020--Hb_000023_190 Hb_028487_110 Hb_028487_110 Hb_009535_020--Hb_028487_110 Hb_004218_240 Hb_004218_240 Hb_009535_020--Hb_004218_240 Hb_000567_050 Hb_000567_050 Hb_009535_020--Hb_000567_050 Hb_000207_390 Hb_000207_390 Hb_002200_130--Hb_000207_390 Hb_002200_130--Hb_003362_040 Hb_001301_200 Hb_001301_200 Hb_002200_130--Hb_001301_200 Hb_001797_050 Hb_001797_050 Hb_002200_130--Hb_001797_050 Hb_106371_010 Hb_106371_010 Hb_003090_080--Hb_106371_010 Hb_000160_040 Hb_000160_040 Hb_003090_080--Hb_000160_040 Hb_001369_420 Hb_001369_420 Hb_003090_080--Hb_001369_420 Hb_033834_060 Hb_033834_060 Hb_003090_080--Hb_033834_060 Hb_004117_130 Hb_004117_130 Hb_003090_080--Hb_004117_130 Hb_000743_040 Hb_000743_040 Hb_000600_070--Hb_000743_040 Hb_000347_130 Hb_000347_130 Hb_000600_070--Hb_000347_130 Hb_000600_070--Hb_000567_050 Hb_003428_070 Hb_003428_070 Hb_000600_070--Hb_003428_070 Hb_000600_070--Hb_000023_190 Hb_000173_510--Hb_003428_070 Hb_000567_010 Hb_000567_010 Hb_000173_510--Hb_000567_010 Hb_000768_110 Hb_000768_110 Hb_000173_510--Hb_000768_110 Hb_000173_510--Hb_000160_040 Hb_000283_070 Hb_000283_070 Hb_000173_510--Hb_000283_070 Hb_000059_150 Hb_000059_150 Hb_000173_510--Hb_000059_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.8398 23.4284 12.8986 31.3197 67.951 72.0262
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.1298 19.426 42.7633 33.9639 20.5438

CAGE analysis