Hb_000283_070

Information

Type -
Description -
Location Contig283: 85680-87281
Sequence    

Annotation

kegg
ID cmo:103500729
description T-complex protein 1 subunit delta
nr
ID XP_012080304.1
description PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
swissprot
ID Q9LV21
description T-complex protein 1 subunit delta OS=Arabidopsis thaliana GN=CCT4 PE=1 SV=1
trembl
ID A0A067LHX6
description T-complex protein 1 subunit delta OS=Jatropha curcas GN=JCGZ_02434 PE=3 SV=1
Gene Ontology
ID GO:0005829
description t-complex protein 1 subunit delta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000283_070 0.0 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
2 Hb_000107_500 0.0466013551 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
3 Hb_000645_120 0.0577767075 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
4 Hb_006831_110 0.058385057 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
5 Hb_002255_050 0.0621917359 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
6 Hb_003428_070 0.0648428592 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
7 Hb_001797_050 0.0651957483 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
8 Hb_000173_510 0.0652165146 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
9 Hb_000318_510 0.066931697 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]
10 Hb_000510_310 0.0673132647 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
11 Hb_003966_030 0.0681289496 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
12 Hb_000922_370 0.0694928624 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
13 Hb_002304_090 0.0698570369 - - PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform X1 [Jatropha curcas]
14 Hb_000743_040 0.0700436194 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
15 Hb_009411_010 0.0701854316 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
16 Hb_000600_070 0.0703817566 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
17 Hb_002042_140 0.0704323162 - - PREDICTED: uncharacterized protein LOC105647570 [Jatropha curcas]
18 Hb_003362_040 0.0704529729 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
19 Hb_003362_070 0.0705643276 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
20 Hb_003044_020 0.0709450703 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]

Gene co-expression network

sample Hb_000283_070 Hb_000283_070 Hb_000107_500 Hb_000107_500 Hb_000283_070--Hb_000107_500 Hb_000645_120 Hb_000645_120 Hb_000283_070--Hb_000645_120 Hb_006831_110 Hb_006831_110 Hb_000283_070--Hb_006831_110 Hb_002255_050 Hb_002255_050 Hb_000283_070--Hb_002255_050 Hb_003428_070 Hb_003428_070 Hb_000283_070--Hb_003428_070 Hb_001797_050 Hb_001797_050 Hb_000283_070--Hb_001797_050 Hb_001541_020 Hb_001541_020 Hb_000107_500--Hb_001541_020 Hb_000107_500--Hb_006831_110 Hb_000002_040 Hb_000002_040 Hb_000107_500--Hb_000002_040 Hb_000510_310 Hb_000510_310 Hb_000107_500--Hb_000510_310 Hb_000025_360 Hb_000025_360 Hb_000107_500--Hb_000025_360 Hb_001140_350 Hb_001140_350 Hb_000645_120--Hb_001140_350 Hb_008864_110 Hb_008864_110 Hb_000645_120--Hb_008864_110 Hb_005321_020 Hb_005321_020 Hb_000645_120--Hb_005321_020 Hb_000645_120--Hb_000510_310 Hb_003124_130 Hb_003124_130 Hb_000645_120--Hb_003124_130 Hb_000071_030 Hb_000071_030 Hb_006831_110--Hb_000071_030 Hb_002042_140 Hb_002042_140 Hb_006831_110--Hb_002042_140 Hb_006831_110--Hb_005321_020 Hb_009620_050 Hb_009620_050 Hb_006831_110--Hb_009620_050 Hb_002255_050--Hb_006831_110 Hb_022408_010 Hb_022408_010 Hb_002255_050--Hb_022408_010 Hb_002221_050 Hb_002221_050 Hb_002255_050--Hb_002221_050 Hb_009627_010 Hb_009627_010 Hb_002255_050--Hb_009627_010 Hb_002255_050--Hb_000645_120 Hb_000567_050 Hb_000567_050 Hb_003428_070--Hb_000567_050 Hb_016898_010 Hb_016898_010 Hb_003428_070--Hb_016898_010 Hb_000101_240 Hb_000101_240 Hb_003428_070--Hb_000101_240 Hb_000743_040 Hb_000743_040 Hb_003428_070--Hb_000743_040 Hb_000820_170 Hb_000820_170 Hb_003428_070--Hb_000820_170 Hb_000173_510 Hb_000173_510 Hb_003428_070--Hb_000173_510 Hb_004724_060 Hb_004724_060 Hb_001797_050--Hb_004724_060 Hb_000207_390 Hb_000207_390 Hb_001797_050--Hb_000207_390 Hb_007163_090 Hb_007163_090 Hb_001797_050--Hb_007163_090 Hb_009411_010 Hb_009411_010 Hb_001797_050--Hb_009411_010 Hb_004204_080 Hb_004204_080 Hb_001797_050--Hb_004204_080 Hb_000803_190 Hb_000803_190 Hb_001797_050--Hb_000803_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
99.3974 77.3051 34.1683 51.7938 98.9797 131.03
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.2437 39.4193 72.8673 62.2025 41.0561

CAGE analysis