Hb_005321_020

Information

Type -
Description -
Location Contig5321: 945-8570
Sequence    

Annotation

kegg
ID pop:POPTR_0012s12440g
description POPTRDRAFT_772815; splicing factor-related family protein
nr
ID XP_002318579.1
description splicing factor-related family protein [Populus trichocarpa]
swissprot
ID Q9SHY8
description Pre-mRNA-splicing factor SLU7-A OS=Arabidopsis thaliana GN=At1g65660 PE=1 SV=2
trembl
ID B9I2T5
description Splicing factor-related family protein OS=Populus trichocarpa GN=POPTR_0012s12440g PE=4 SV=1
Gene Ontology
ID GO:0003676
description splicing factor-related family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47417: 932-8570 , PASA_asmbl_47418: 1406-1571
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005321_020 0.0 - - splicing factor-related family protein [Populus trichocarpa]
2 Hb_006831_110 0.0522175519 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
3 Hb_000563_640 0.0621069781 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
4 Hb_000645_120 0.0645011564 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
5 Hb_003531_060 0.0657797953 - - unnamed protein product [Coffea canephora]
6 Hb_000283_070 0.0711366482 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
7 Hb_009620_050 0.0718684132 - - PREDICTED: protein unc-45 homolog A [Jatropha curcas]
8 Hb_000922_370 0.0728687845 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
9 Hb_000071_030 0.0733307188 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
10 Hb_001454_280 0.0735482711 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
11 Hb_011030_010 0.0789423749 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
12 Hb_000107_500 0.0792426791 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
13 Hb_000983_150 0.0794758614 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
14 Hb_002235_160 0.0810179056 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
15 Hb_002174_020 0.0810330957 - - ring finger protein, putative [Ricinus communis]
16 Hb_010193_050 0.0824188286 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000088_130 0.0825786903 - - hypothetical protein JCGZ_02447 [Jatropha curcas]
18 Hb_033187_050 0.0826580581 - - PREDICTED: exocyst complex component SEC15B [Jatropha curcas]
19 Hb_001140_350 0.0828947198 - - PREDICTED: uncharacterized protein LOC105648465 [Jatropha curcas]
20 Hb_000680_090 0.0833628731 - - Protein SEY1, putative [Ricinus communis]

Gene co-expression network

sample Hb_005321_020 Hb_005321_020 Hb_006831_110 Hb_006831_110 Hb_005321_020--Hb_006831_110 Hb_000563_640 Hb_000563_640 Hb_005321_020--Hb_000563_640 Hb_000645_120 Hb_000645_120 Hb_005321_020--Hb_000645_120 Hb_003531_060 Hb_003531_060 Hb_005321_020--Hb_003531_060 Hb_000283_070 Hb_000283_070 Hb_005321_020--Hb_000283_070 Hb_009620_050 Hb_009620_050 Hb_005321_020--Hb_009620_050 Hb_000071_030 Hb_000071_030 Hb_006831_110--Hb_000071_030 Hb_002042_140 Hb_002042_140 Hb_006831_110--Hb_002042_140 Hb_006831_110--Hb_000283_070 Hb_006831_110--Hb_009620_050 Hb_000107_500 Hb_000107_500 Hb_006831_110--Hb_000107_500 Hb_000563_640--Hb_009620_050 Hb_002615_090 Hb_002615_090 Hb_000563_640--Hb_002615_090 Hb_000563_640--Hb_006831_110 Hb_000922_370 Hb_000922_370 Hb_000563_640--Hb_000922_370 Hb_074969_010 Hb_074969_010 Hb_000563_640--Hb_074969_010 Hb_000645_120--Hb_000283_070 Hb_001140_350 Hb_001140_350 Hb_000645_120--Hb_001140_350 Hb_008864_110 Hb_008864_110 Hb_000645_120--Hb_008864_110 Hb_000510_310 Hb_000510_310 Hb_000645_120--Hb_000510_310 Hb_003124_130 Hb_003124_130 Hb_000645_120--Hb_003124_130 Hb_003531_060--Hb_006831_110 Hb_003531_060--Hb_000283_070 Hb_003531_060--Hb_000107_500 Hb_011030_010 Hb_011030_010 Hb_003531_060--Hb_011030_010 Hb_033187_050 Hb_033187_050 Hb_003531_060--Hb_033187_050 Hb_000283_070--Hb_000107_500 Hb_002255_050 Hb_002255_050 Hb_000283_070--Hb_002255_050 Hb_003428_070 Hb_003428_070 Hb_000283_070--Hb_003428_070 Hb_001797_050 Hb_001797_050 Hb_000283_070--Hb_001797_050 Hb_009620_050--Hb_000107_500 Hb_002174_020 Hb_002174_020 Hb_009620_050--Hb_002174_020 Hb_009620_050--Hb_002042_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
66.6726 46.8507 24.82 35.5223 46.4401 60.3772
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.1696 19.0348 39.4523 35.6861 25.968

CAGE analysis