Hb_033187_050

Information

Type -
Description -
Location Contig33187: 57813-60233
Sequence    

Annotation

kegg
ID rcu:RCOM_1178690
description sec15, putative
nr
ID XP_012082801.1
description PREDICTED: exocyst complex component SEC15B [Jatropha curcas]
swissprot
ID F4JHH5
description Exocyst complex component SEC15B OS=Arabidopsis thaliana GN=SEC15B PE=1 SV=1
trembl
ID A0A067JWB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13953 PE=4 SV=1
Gene Ontology
ID GO:0000145
description exocyst complex component sec15b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34885: 57805-60361 , PASA_asmbl_34886: 57805-60753
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033187_050 0.0 - - PREDICTED: exocyst complex component SEC15B [Jatropha curcas]
2 Hb_000645_120 0.0727991067 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
3 Hb_011030_010 0.0731597373 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
4 Hb_147737_010 0.0768761094 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
5 Hb_003531_060 0.0773406533 - - unnamed protein product [Coffea canephora]
6 Hb_000531_090 0.0795751294 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
7 Hb_009969_030 0.0812000407 - - PREDICTED: argininosuccinate synthase, chloroplastic [Jatropha curcas]
8 Hb_005321_020 0.0826580581 - - splicing factor-related family protein [Populus trichocarpa]
9 Hb_002255_050 0.083496922 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
10 Hb_015026_050 0.0855491377 - - XPA-binding protein, putative [Ricinus communis]
11 Hb_002235_160 0.0859722853 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
12 Hb_000283_070 0.0875092101 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
13 Hb_000755_030 0.0895598731 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
14 Hb_125092_020 0.0916482135 - - PREDICTED: nucleolin 1-like isoform X1 [Jatropha curcas]
15 Hb_006831_110 0.0927367639 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
16 Hb_003124_130 0.0939487762 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
17 Hb_000417_160 0.0960591545 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
18 Hb_007188_070 0.0961606449 - - prokaryotic DNA topoisomerase, putative [Ricinus communis]
19 Hb_002893_150 0.0970327051 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
20 Hb_000915_050 0.0981852467 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_033187_050 Hb_033187_050 Hb_000645_120 Hb_000645_120 Hb_033187_050--Hb_000645_120 Hb_011030_010 Hb_011030_010 Hb_033187_050--Hb_011030_010 Hb_147737_010 Hb_147737_010 Hb_033187_050--Hb_147737_010 Hb_003531_060 Hb_003531_060 Hb_033187_050--Hb_003531_060 Hb_000531_090 Hb_000531_090 Hb_033187_050--Hb_000531_090 Hb_009969_030 Hb_009969_030 Hb_033187_050--Hb_009969_030 Hb_000283_070 Hb_000283_070 Hb_000645_120--Hb_000283_070 Hb_001140_350 Hb_001140_350 Hb_000645_120--Hb_001140_350 Hb_008864_110 Hb_008864_110 Hb_000645_120--Hb_008864_110 Hb_005321_020 Hb_005321_020 Hb_000645_120--Hb_005321_020 Hb_000510_310 Hb_000510_310 Hb_000645_120--Hb_000510_310 Hb_003124_130 Hb_003124_130 Hb_000645_120--Hb_003124_130 Hb_011030_010--Hb_003531_060 Hb_000915_050 Hb_000915_050 Hb_011030_010--Hb_000915_050 Hb_011030_010--Hb_005321_020 Hb_002163_030 Hb_002163_030 Hb_011030_010--Hb_002163_030 Hb_011030_010--Hb_000283_070 Hb_000329_130 Hb_000329_130 Hb_147737_010--Hb_000329_130 Hb_015026_050 Hb_015026_050 Hb_147737_010--Hb_015026_050 Hb_000343_210 Hb_000343_210 Hb_147737_010--Hb_000343_210 Hb_000567_010 Hb_000567_010 Hb_147737_010--Hb_000567_010 Hb_147737_010--Hb_003124_130 Hb_147737_010--Hb_000531_090 Hb_003531_060--Hb_005321_020 Hb_006831_110 Hb_006831_110 Hb_003531_060--Hb_006831_110 Hb_003531_060--Hb_000283_070 Hb_000107_500 Hb_000107_500 Hb_003531_060--Hb_000107_500 Hb_125092_020 Hb_125092_020 Hb_000531_090--Hb_125092_020 Hb_002893_150 Hb_002893_150 Hb_000531_090--Hb_002893_150 Hb_000789_080 Hb_000789_080 Hb_000531_090--Hb_000789_080 Hb_000035_040 Hb_000035_040 Hb_000531_090--Hb_000035_040 Hb_000531_090--Hb_000343_210 Hb_093432_010 Hb_093432_010 Hb_009969_030--Hb_093432_010 Hb_000347_130 Hb_000347_130 Hb_009969_030--Hb_000347_130 Hb_000755_030 Hb_000755_030 Hb_009969_030--Hb_000755_030 Hb_009969_030--Hb_003124_130 Hb_009969_030--Hb_000283_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
70.8401 38.6791 25.4807 25.3958 50.2961 75.0733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.7969 11.4454 38.343 29.0837 18.3782

CAGE analysis