Hb_011030_010

Information

Type desease resistance
Description Gene Name: RLI
Location Contig11030: 4378-14498
Sequence    

Annotation

kegg
ID tcc:TCM_016698
description RNAse l inhibitor protein 2 isoform 1
nr
ID AIU41641.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q8LPJ4
description ABC transporter E family member 2 OS=Arabidopsis thaliana GN=ABCE2 PE=2 SV=1
trembl
ID A0A097P9S2
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCE2 PE=2 SV=1
Gene Ontology
ID GO:0005215
description abc transporter e family member 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03211: 4365-14526
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011030_010 0.0 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
2 Hb_033187_050 0.0731597373 - - PREDICTED: exocyst complex component SEC15B [Jatropha curcas]
3 Hb_003531_060 0.0754889149 - - unnamed protein product [Coffea canephora]
4 Hb_000915_050 0.0777888102 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005321_020 0.0789423749 - - splicing factor-related family protein [Populus trichocarpa]
6 Hb_002163_030 0.0814753404 - - PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform [Jatropha curcas]
7 Hb_000283_070 0.0840815704 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
8 Hb_003216_080 0.0849146338 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Jatropha curcas]
9 Hb_000544_090 0.0873856233 - - PREDICTED: golgin candidate 2 [Jatropha curcas]
10 Hb_002893_150 0.0887861487 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
11 Hb_002235_160 0.0890616023 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
12 Hb_006831_110 0.093674819 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
13 Hb_046931_010 0.0942336417 - - hypothetical protein JCGZ_26924 [Jatropha curcas]
14 Hb_000107_500 0.0947768759 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
15 Hb_000645_120 0.0948602085 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
16 Hb_020000_020 0.0956915863 - - Troponin C, skeletal muscle, putative [Ricinus communis]
17 Hb_001700_040 0.0958269287 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
18 Hb_000244_250 0.096462693 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
19 Hb_000359_250 0.0965429938 - - PREDICTED: pentatricopeptide repeat-containing protein At2g26790, mitochondrial [Vitis vinifera]
20 Hb_003362_040 0.0968893634 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]

Gene co-expression network

sample Hb_011030_010 Hb_011030_010 Hb_033187_050 Hb_033187_050 Hb_011030_010--Hb_033187_050 Hb_003531_060 Hb_003531_060 Hb_011030_010--Hb_003531_060 Hb_000915_050 Hb_000915_050 Hb_011030_010--Hb_000915_050 Hb_005321_020 Hb_005321_020 Hb_011030_010--Hb_005321_020 Hb_002163_030 Hb_002163_030 Hb_011030_010--Hb_002163_030 Hb_000283_070 Hb_000283_070 Hb_011030_010--Hb_000283_070 Hb_000645_120 Hb_000645_120 Hb_033187_050--Hb_000645_120 Hb_147737_010 Hb_147737_010 Hb_033187_050--Hb_147737_010 Hb_033187_050--Hb_003531_060 Hb_000531_090 Hb_000531_090 Hb_033187_050--Hb_000531_090 Hb_009969_030 Hb_009969_030 Hb_033187_050--Hb_009969_030 Hb_003531_060--Hb_005321_020 Hb_006831_110 Hb_006831_110 Hb_003531_060--Hb_006831_110 Hb_003531_060--Hb_000283_070 Hb_000107_500 Hb_000107_500 Hb_003531_060--Hb_000107_500 Hb_003362_040 Hb_003362_040 Hb_000915_050--Hb_003362_040 Hb_000244_250 Hb_000244_250 Hb_000915_050--Hb_000244_250 Hb_000184_130 Hb_000184_130 Hb_000915_050--Hb_000184_130 Hb_004055_040 Hb_004055_040 Hb_000915_050--Hb_004055_040 Hb_000915_050--Hb_000283_070 Hb_004204_020 Hb_004204_020 Hb_000915_050--Hb_004204_020 Hb_005321_020--Hb_006831_110 Hb_000563_640 Hb_000563_640 Hb_005321_020--Hb_000563_640 Hb_005321_020--Hb_000645_120 Hb_005321_020--Hb_000283_070 Hb_009620_050 Hb_009620_050 Hb_005321_020--Hb_009620_050 Hb_001252_010 Hb_001252_010 Hb_002163_030--Hb_001252_010 Hb_003609_030 Hb_003609_030 Hb_002163_030--Hb_003609_030 Hb_020000_020 Hb_020000_020 Hb_002163_030--Hb_020000_020 Hb_002163_030--Hb_000283_070 Hb_004888_020 Hb_004888_020 Hb_002163_030--Hb_004888_020 Hb_000283_070--Hb_000107_500 Hb_000283_070--Hb_000645_120 Hb_000283_070--Hb_006831_110 Hb_002255_050 Hb_002255_050 Hb_000283_070--Hb_002255_050 Hb_003428_070 Hb_003428_070 Hb_000283_070--Hb_003428_070 Hb_001797_050 Hb_001797_050 Hb_000283_070--Hb_001797_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.8571 24.3611 13.566 17.8166 24.7705 50.4294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.7495 12.0426 28.9002 19.404 16.7932

CAGE analysis