Hb_000531_090

Information

Type -
Description -
Location Contig531: 149759-162080
Sequence    

Annotation

kegg
ID pop:POPTR_0006s01070g
description POPTRDRAFT_1080142; hypothetical protein
nr
ID XP_012069319.1
description PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
swissprot
ID Q9SU25
description Transcription initiation factor IIF subunit alpha OS=Arabidopsis thaliana GN=RAP74 PE=1 SV=1
trembl
ID A0A067L7G8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03950 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription initiation factor iif subunit alpha

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47389: 149540-162030 , PASA_asmbl_47390: 151528-155441 , PASA_asmbl_47394: 149607-155441
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000531_090 0.0 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
2 Hb_125092_020 0.0457605275 - - PREDICTED: nucleolin 1-like isoform X1 [Jatropha curcas]
3 Hb_002893_150 0.04643538 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
4 Hb_000789_080 0.0531625728 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
5 Hb_000035_040 0.059906738 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
6 Hb_000343_210 0.0617741579 - - ran-binding protein, putative [Ricinus communis]
7 Hb_147737_010 0.0625941229 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
8 Hb_000331_190 0.0636336994 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
9 Hb_024990_010 0.0653436592 - - PREDICTED: la protein 1 [Jatropha curcas]
10 Hb_046615_020 0.0664619337 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
11 Hb_001235_200 0.0696670337 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000567_010 0.0711674061 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
13 Hb_002235_160 0.0748222687 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
14 Hb_002652_040 0.0753544171 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
15 Hb_021409_170 0.0772962549 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
16 Hb_004678_060 0.0773553278 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
17 Hb_000436_040 0.0780507536 - - PREDICTED: transportin-1 [Jatropha curcas]
18 Hb_000329_130 0.0790440414 - - beta-tubulin cofactor d, putative [Ricinus communis]
19 Hb_000335_010 0.0790695827 - - WD-repeat protein, putative [Ricinus communis]
20 Hb_002044_060 0.0790937304 - - elongation factor ts, putative [Ricinus communis]

Gene co-expression network

sample Hb_000531_090 Hb_000531_090 Hb_125092_020 Hb_125092_020 Hb_000531_090--Hb_125092_020 Hb_002893_150 Hb_002893_150 Hb_000531_090--Hb_002893_150 Hb_000789_080 Hb_000789_080 Hb_000531_090--Hb_000789_080 Hb_000035_040 Hb_000035_040 Hb_000531_090--Hb_000035_040 Hb_000343_210 Hb_000343_210 Hb_000531_090--Hb_000343_210 Hb_147737_010 Hb_147737_010 Hb_000531_090--Hb_147737_010 Hb_000331_190 Hb_000331_190 Hb_125092_020--Hb_000331_190 Hb_002652_040 Hb_002652_040 Hb_125092_020--Hb_002652_040 Hb_125092_020--Hb_000035_040 Hb_024990_010 Hb_024990_010 Hb_125092_020--Hb_024990_010 Hb_000567_010 Hb_000567_010 Hb_125092_020--Hb_000567_010 Hb_002893_150--Hb_000789_080 Hb_001235_200 Hb_001235_200 Hb_002893_150--Hb_001235_200 Hb_000510_200 Hb_000510_200 Hb_002893_150--Hb_000510_200 Hb_002893_150--Hb_125092_020 Hb_000436_040 Hb_000436_040 Hb_002893_150--Hb_000436_040 Hb_000335_010 Hb_000335_010 Hb_000789_080--Hb_000335_010 Hb_026099_010 Hb_026099_010 Hb_000789_080--Hb_026099_010 Hb_002400_180 Hb_002400_180 Hb_000789_080--Hb_002400_180 Hb_002044_060 Hb_002044_060 Hb_000789_080--Hb_002044_060 Hb_000035_040--Hb_002652_040 Hb_000424_010 Hb_000424_010 Hb_000035_040--Hb_000424_010 Hb_031754_010 Hb_031754_010 Hb_000035_040--Hb_031754_010 Hb_000035_040--Hb_000331_190 Hb_002043_170 Hb_002043_170 Hb_000035_040--Hb_002043_170 Hb_000343_210--Hb_147737_010 Hb_002675_040 Hb_002675_040 Hb_000343_210--Hb_002675_040 Hb_000343_210--Hb_000035_040 Hb_000343_210--Hb_000331_190 Hb_003020_110 Hb_003020_110 Hb_000343_210--Hb_003020_110 Hb_000329_130 Hb_000329_130 Hb_147737_010--Hb_000329_130 Hb_015026_050 Hb_015026_050 Hb_147737_010--Hb_015026_050 Hb_147737_010--Hb_000567_010 Hb_003124_130 Hb_003124_130 Hb_147737_010--Hb_003124_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
106.887 46.0683 31.8376 28.3959 80.3103 114.056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.4693 24.8927 36.3379 44.7187 28.5417

CAGE analysis