Hb_000331_190

Information

Type -
Description -
Location Contig331: 183718-190747
Sequence    

Annotation

kegg
ID rcu:RCOM_1506680
description nucleolar protein nop56, putative
nr
ID XP_012079869.1
description PREDICTED: nucleolar protein 56-like [Jatropha curcas]
swissprot
ID O94514
description Nucleolar protein 56 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nop56 PE=3 SV=1
trembl
ID A0A067K7D6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11319 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34773: 183718-190589
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_190 0.0 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
2 Hb_002652_040 0.0427076851 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
3 Hb_125092_020 0.0508095635 - - PREDICTED: nucleolin 1-like isoform X1 [Jatropha curcas]
4 Hb_024990_010 0.0562367407 - - PREDICTED: la protein 1 [Jatropha curcas]
5 Hb_000035_040 0.0593916342 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
6 Hb_000567_010 0.0611517738 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
7 Hb_000340_160 0.0613429793 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
8 Hb_000343_210 0.0615326519 - - ran-binding protein, putative [Ricinus communis]
9 Hb_000531_090 0.0636336994 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
10 Hb_000239_070 0.0659332168 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]
11 Hb_002883_010 0.0668317969 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
12 Hb_147737_010 0.0694860707 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
13 Hb_000329_130 0.0706800136 - - beta-tubulin cofactor d, putative [Ricinus communis]
14 Hb_000213_070 0.0712358779 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 [Jatropha curcas]
15 Hb_000120_510 0.074122964 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
16 Hb_175338_020 0.0754986716 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
17 Hb_000424_010 0.0764326405 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
18 Hb_002235_320 0.0769880833 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
19 Hb_002675_060 0.0792659716 - - PREDICTED: uncharacterized protein LOC105634954 isoform X2 [Jatropha curcas]
20 Hb_001028_070 0.0806500992 - - PREDICTED: WD repeat-containing protein 75 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000331_190 Hb_000331_190 Hb_002652_040 Hb_002652_040 Hb_000331_190--Hb_002652_040 Hb_125092_020 Hb_125092_020 Hb_000331_190--Hb_125092_020 Hb_024990_010 Hb_024990_010 Hb_000331_190--Hb_024990_010 Hb_000035_040 Hb_000035_040 Hb_000331_190--Hb_000035_040 Hb_000567_010 Hb_000567_010 Hb_000331_190--Hb_000567_010 Hb_000340_160 Hb_000340_160 Hb_000331_190--Hb_000340_160 Hb_002652_040--Hb_000035_040 Hb_000424_010 Hb_000424_010 Hb_002652_040--Hb_000424_010 Hb_002652_040--Hb_125092_020 Hb_002883_010 Hb_002883_010 Hb_002652_040--Hb_002883_010 Hb_175338_020 Hb_175338_020 Hb_002652_040--Hb_175338_020 Hb_000531_090 Hb_000531_090 Hb_125092_020--Hb_000531_090 Hb_125092_020--Hb_000035_040 Hb_125092_020--Hb_024990_010 Hb_125092_020--Hb_000567_010 Hb_024990_010--Hb_000531_090 Hb_024990_010--Hb_000340_160 Hb_001221_040 Hb_001221_040 Hb_024990_010--Hb_001221_040 Hb_007668_040 Hb_007668_040 Hb_024990_010--Hb_007668_040 Hb_000035_040--Hb_000424_010 Hb_031754_010 Hb_031754_010 Hb_000035_040--Hb_031754_010 Hb_000035_040--Hb_000531_090 Hb_002043_170 Hb_002043_170 Hb_000035_040--Hb_002043_170 Hb_003124_130 Hb_003124_130 Hb_000567_010--Hb_003124_130 Hb_010193_050 Hb_010193_050 Hb_000567_010--Hb_010193_050 Hb_005494_020 Hb_005494_020 Hb_000567_010--Hb_005494_020 Hb_147737_010 Hb_147737_010 Hb_000567_010--Hb_147737_010 Hb_000768_110 Hb_000768_110 Hb_000567_010--Hb_000768_110 Hb_000239_070 Hb_000239_070 Hb_000340_160--Hb_000239_070 Hb_000699_250 Hb_000699_250 Hb_000340_160--Hb_000699_250 Hb_000340_160--Hb_000567_010 Hb_000340_160--Hb_125092_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.8822 27.6535 17.5086 12.1415 52.0243 59.5279
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.9334 15.2637 14.7075 26.0118 11.6063

CAGE analysis