Hb_005494_020

Information

Type -
Description -
Location Contig5494: 15967-24291
Sequence    

Annotation

kegg
ID pxb:103937696
description transmembrane protein 184 homolog DDB_G0279555-like
nr
ID XP_012067159.1
description PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
swissprot
ID F4JTN2
description Protein LAZ1 OS=Arabidopsis thaliana GN=LAZ1 PE=1 SV=1
trembl
ID A0A067LBZ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03088 PE=4 SV=1
Gene Ontology
ID GO:0006816
description transmembrane protein 184 homolog ddb_g0279555-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48195: 22723-23496 , PASA_asmbl_48196: 23801-24303
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005494_020 0.0 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
2 Hb_000567_010 0.0508388484 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
3 Hb_029142_010 0.0552457912 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
4 Hb_003935_030 0.0652751538 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
5 Hb_002960_160 0.0658656385 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
6 Hb_003428_070 0.0672087249 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
7 Hb_000347_130 0.0678547148 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
8 Hb_010180_040 0.0693234286 - - PREDICTED: prosaposin isoform X1 [Jatropha curcas]
9 Hb_003124_130 0.0695141557 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
10 Hb_000743_040 0.0715619282 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
11 Hb_000600_070 0.0749550591 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
12 Hb_000567_050 0.0751729508 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
13 Hb_000160_290 0.0778208059 - - unnamed protein product [Vitis vinifera]
14 Hb_002027_270 0.0784623268 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
15 Hb_003299_070 0.0790560087 - - AMP deaminase [Theobroma cacao]
16 Hb_025012_010 0.0798170009 - - PREDICTED: importin-4 [Vitis vinifera]
17 Hb_000768_110 0.0801086286 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
18 Hb_080313_010 0.0816858932 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
19 Hb_008714_020 0.0834578395 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
20 Hb_004450_010 0.0838314689 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]

Gene co-expression network

sample Hb_005494_020 Hb_005494_020 Hb_000567_010 Hb_000567_010 Hb_005494_020--Hb_000567_010 Hb_029142_010 Hb_029142_010 Hb_005494_020--Hb_029142_010 Hb_003935_030 Hb_003935_030 Hb_005494_020--Hb_003935_030 Hb_002960_160 Hb_002960_160 Hb_005494_020--Hb_002960_160 Hb_003428_070 Hb_003428_070 Hb_005494_020--Hb_003428_070 Hb_000347_130 Hb_000347_130 Hb_005494_020--Hb_000347_130 Hb_003124_130 Hb_003124_130 Hb_000567_010--Hb_003124_130 Hb_010193_050 Hb_010193_050 Hb_000567_010--Hb_010193_050 Hb_147737_010 Hb_147737_010 Hb_000567_010--Hb_147737_010 Hb_000768_110 Hb_000768_110 Hb_000567_010--Hb_000768_110 Hb_000331_190 Hb_000331_190 Hb_000567_010--Hb_000331_190 Hb_005122_080 Hb_005122_080 Hb_029142_010--Hb_005122_080 Hb_029142_010--Hb_000567_010 Hb_000107_040 Hb_000107_040 Hb_029142_010--Hb_000107_040 Hb_000023_060 Hb_000023_060 Hb_029142_010--Hb_000023_060 Hb_000997_030 Hb_000997_030 Hb_029142_010--Hb_000997_030 Hb_003299_070 Hb_003299_070 Hb_003935_030--Hb_003299_070 Hb_003935_030--Hb_000567_010 Hb_003935_030--Hb_003428_070 Hb_002304_090 Hb_002304_090 Hb_003935_030--Hb_002304_090 Hb_003935_030--Hb_000768_110 Hb_002960_160--Hb_000567_010 Hb_063716_080 Hb_063716_080 Hb_002960_160--Hb_063716_080 Hb_000796_190 Hb_000796_190 Hb_002960_160--Hb_000796_190 Hb_000743_040 Hb_000743_040 Hb_002960_160--Hb_000743_040 Hb_002044_060 Hb_002044_060 Hb_002960_160--Hb_002044_060 Hb_000567_050 Hb_000567_050 Hb_003428_070--Hb_000567_050 Hb_016898_010 Hb_016898_010 Hb_003428_070--Hb_016898_010 Hb_000101_240 Hb_000101_240 Hb_003428_070--Hb_000101_240 Hb_003428_070--Hb_000743_040 Hb_000820_170 Hb_000820_170 Hb_003428_070--Hb_000820_170 Hb_000173_510 Hb_000173_510 Hb_003428_070--Hb_000173_510 Hb_000600_070 Hb_000600_070 Hb_000347_130--Hb_000600_070 Hb_003966_030 Hb_003966_030 Hb_000347_130--Hb_003966_030 Hb_000347_130--Hb_000567_010 Hb_025012_010 Hb_025012_010 Hb_000347_130--Hb_025012_010 Hb_000347_130--Hb_003428_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.542 15.6718 5.04992 9.36319 19.867 28.8493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9951 7.83484 7.38314 14.3039 6.94288

CAGE analysis