Hb_005122_080

Information

Type -
Description -
Location Contig5122: 139826-140831
Sequence    

Annotation

kegg
ID rcu:RCOM_1646110
description prokaryotic DNA topoisomerase, putative (EC:5.99.1.2)
nr
ID XP_002516387.1
description prokaryotic DNA topoisomerase, putative [Ricinus communis]
swissprot
ID Q0J0S6
description DNA topoisomerase 3-beta OS=Oryza sativa subsp. japonica GN=TOP3B PE=2 SV=1
trembl
ID B9RRL8
description DNA topoisomerase OS=Ricinus communis GN=RCOM_1646110 PE=3 SV=1
Gene Ontology
ID GO:0003677
description dna topoisomerase 3-beta isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46378: 130773-140797
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005122_080 0.0 - - prokaryotic DNA topoisomerase, putative [Ricinus communis]
2 Hb_029142_010 0.0637566761 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
3 Hb_002163_010 0.0785046557 - - PREDICTED: UBA and UBX domain-containing protein At4g15410 [Jatropha curcas]
4 Hb_001633_040 0.0816642185 - - PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Jatropha curcas]
5 Hb_010080_060 0.0892335474 - - receptor protein kinase, putative [Ricinus communis]
6 Hb_031042_070 0.0953899812 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005494_020 0.0968017372 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
8 Hb_000567_010 0.0986089796 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
9 Hb_000244_220 0.099329017 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
10 Hb_000865_080 0.0998096319 - - arsenite-resistance protein, putative [Ricinus communis]
11 Hb_030565_090 0.0998760682 - - PREDICTED: DNA repair protein RAD50 [Jatropha curcas]
12 Hb_042487_010 0.1006240913 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Jatropha curcas]
13 Hb_001157_180 0.1012930179 - - protein binding protein, putative [Ricinus communis]
14 Hb_003935_030 0.1022980896 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
15 Hb_000340_160 0.1024650394 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
16 Hb_003299_070 0.1029006733 - - AMP deaminase [Theobroma cacao]
17 Hb_003747_010 0.1031331449 - - hypothetical protein JCGZ_24080 [Jatropha curcas]
18 Hb_000209_020 0.1048743297 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
19 Hb_000699_250 0.1052381621 - - Poly(rC)-binding protein, putative [Ricinus communis]
20 Hb_004310_050 0.1052438611 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]

Gene co-expression network

sample Hb_005122_080 Hb_005122_080 Hb_029142_010 Hb_029142_010 Hb_005122_080--Hb_029142_010 Hb_002163_010 Hb_002163_010 Hb_005122_080--Hb_002163_010 Hb_001633_040 Hb_001633_040 Hb_005122_080--Hb_001633_040 Hb_010080_060 Hb_010080_060 Hb_005122_080--Hb_010080_060 Hb_031042_070 Hb_031042_070 Hb_005122_080--Hb_031042_070 Hb_005494_020 Hb_005494_020 Hb_005122_080--Hb_005494_020 Hb_029142_010--Hb_005494_020 Hb_000567_010 Hb_000567_010 Hb_029142_010--Hb_000567_010 Hb_000107_040 Hb_000107_040 Hb_029142_010--Hb_000107_040 Hb_000023_060 Hb_000023_060 Hb_029142_010--Hb_000023_060 Hb_000997_030 Hb_000997_030 Hb_029142_010--Hb_000997_030 Hb_000594_040 Hb_000594_040 Hb_002163_010--Hb_000594_040 Hb_003299_070 Hb_003299_070 Hb_002163_010--Hb_003299_070 Hb_002163_010--Hb_031042_070 Hb_002163_010--Hb_001633_040 Hb_003935_030 Hb_003935_030 Hb_002163_010--Hb_003935_030 Hb_001454_320 Hb_001454_320 Hb_002163_010--Hb_001454_320 Hb_001633_040--Hb_031042_070 Hb_033883_060 Hb_033883_060 Hb_001633_040--Hb_033883_060 Hb_000300_360 Hb_000300_360 Hb_001633_040--Hb_000300_360 Hb_007982_070 Hb_007982_070 Hb_001633_040--Hb_007982_070 Hb_030565_090 Hb_030565_090 Hb_001633_040--Hb_030565_090 Hb_004310_050 Hb_004310_050 Hb_010080_060--Hb_004310_050 Hb_000227_380 Hb_000227_380 Hb_010080_060--Hb_000227_380 Hb_033152_080 Hb_033152_080 Hb_010080_060--Hb_033152_080 Hb_000002_440 Hb_000002_440 Hb_010080_060--Hb_000002_440 Hb_000997_090 Hb_000997_090 Hb_010080_060--Hb_000997_090 Hb_031042_070--Hb_033883_060 Hb_031042_070--Hb_007982_070 Hb_031042_070--Hb_000300_360 Hb_007632_020 Hb_007632_020 Hb_031042_070--Hb_007632_020 Hb_005494_020--Hb_000567_010 Hb_005494_020--Hb_003935_030 Hb_002960_160 Hb_002960_160 Hb_005494_020--Hb_002960_160 Hb_003428_070 Hb_003428_070 Hb_005494_020--Hb_003428_070 Hb_000347_130 Hb_000347_130 Hb_005494_020--Hb_000347_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.0471 35.8115 10.395 12.7467 34.9266 53.3133
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.422 15.382 16.3197 37.9091 8.5911

CAGE analysis